RchiOBHm_Chr6g0297691

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019953
Physical Location & Seq
Forward (+)
59357260 .. 59358337
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26720

Sequence Viewer

Length: 354 bp
ATGGCCTGTACGAAAGTCCACCACTCCACCAGCTGCAAGGCTCCCAAGAAGCAACTGGCGACGAAGGCTGCACGGAAGTCGGCCCCGACCACCGGAGGAGTGAAGAAGCCGCACACCCTGGAACGGTGGCTCTCCGTGAAATCCGATAATATAAAATCCTTTCAGAGGCTTGTTCGCTTGTTCGTGAAATCGCTTAGGACTTCAAGACGGACCTGTGTTTCGAGAGCCACGCCGTGTTGGCGCTATAGGAGGCGGCGGAGGCCCATCTTGTTGGGTTGTTTTGAGGAGACTAATCTGTGCGCCATTCATGCCAAGAGTGTCACAATTATGCCCAAGGATTATTCCACGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

10.85

Isoelectric Point (pI)

69.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252291 RchiOBHm_Chr6g0297691 RchiOBHm_Chr7g0202341
rosa_laevigata RLG00000015397
rosa_multiflora Rmu_sc0006252.1_g000008
rosa_roxburghii Rroxscaffold_4G00315650
rosa_rugosa Rorug06G0218200.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 110, 253, 256
AcvI CACGTG 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 92, 123, 165
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 1 cut(s) 204
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 3 cut(s) 3, 81, 260
ApeKI GCWGC 2 cut(s) 33, 68
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
AspLEI GCGC 2 cut(s) 243, 302
AspS9I GGNCC 3 cut(s) 82, 210, 261
AvaII GGWCC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 348
BbvI GCAGC 2 cut(s) 20, 55
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 4 cut(s) 34, 69, 110, 254
BlsI GCNGC 4 cut(s) 35, 70, 111, 255
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 82, 210, 261
BmiI GGNNCC 2 cut(s) 42, 84
BmrFI CCNGG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 117, 333
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 123, 165
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 117, 333
BseLI CCNNNNNNNGG 3 cut(s) 92, 123, 165
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 2 cut(s) 111, 299
BseXI GCAGC 2 cut(s) 20, 55
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 3 cut(s) 5, 83, 262
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 92, 123, 165
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 3 cut(s) 5, 83, 262
BspACI CCGC 3 cut(s) 110, 253, 256
BspANI GGCC 3 cut(s) 5, 83, 262
BspLI GGNNCC 2 cut(s) 42, 84
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 117, 333
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 194
BstENI CCTNNNNNAGG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 302
BstMAI GTCTC 1 cut(s) 281
BstMWI GCNNNNNNNGC 4 cut(s) 65, 238, 259, 308
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 20, 55
BstXI CCANNNNNNTGG 1 cut(s) 271
BsuRI GGCC 3 cut(s) 5, 83, 262
CfoI GCGC 2 cut(s) 243, 302
Cfr13I GGNCC 3 cut(s) 82, 210, 261
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 308
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 194
DraIII CACNNNGTG 1 cut(s) 234
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 348
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 311
FaiI YATR 4 cut(s) 152, 246, 309, 329
FatI CATG 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 34, 69, 110, 254
Fsp4HI GCNGC 4 cut(s) 34, 69, 110, 254
GlaI GCGC 2 cut(s) 242, 301
GluI GCNGC 4 cut(s) 34, 69, 110, 254
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 3 cut(s) 5, 83, 262
HapII CCGG 1 cut(s) 93
HhaI GCGC 2 cut(s) 243, 302
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 2 cut(s) 241, 300
HinP1I GCGC 2 cut(s) 241, 300
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 145, 165
Hpy188III TCNNGA 3 cut(s) 184, 204, 222
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 36, 71
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 238, 259, 308
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 2 cut(s) 241, 300
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 19, 41, 43, 104, 106, 131, 226
Lsp1109I GCAGC 2 cut(s) 20, 55
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 1 cut(s) 115
MluCI AATT 1 cut(s) 324
MnlI CCTC 5 cut(s) 89, 159, 243, 252, 277
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 65, 238, 259, 308
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 2 cut(s) 42, 84
NmuCI GTSAC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 35, 70, 111, 255
PmaCI CACGTG 1 cut(s) 348
PmlI CACGTG 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 42, 84
PspPI GGNCC 3 cut(s) 82, 210, 261
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 326
SatI GCNGC 4 cut(s) 34, 69, 110, 254
Sau96I GGNCC 3 cut(s) 82, 210, 261
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 35, 215, 350
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 1 cut(s) 324
SsiI CCGC 3 cut(s) 110, 253, 256
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 324
TauI GCSGC 2 cut(s) 112, 256
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 33, 68
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 3 cut(s) 88, 124, 223
VpaK11BI GGWCC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.