Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020583

Physical Location & Seq

Genomic Coordinates Forward (+)

8178022 .. 8181982

Gene Structure 3961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATTCAGTGCTTGGAAAGCCTAAAGCAGTTGAGTTCTGGTGAAAGCAGTCAAAAAGGCGACAGGGTTTTGATTAGGTGCCAGGCTACTCGAGATCTTGTTTTGGGCTTGAAGAACATGGCTTCATATCTTCATGATTTGCAAAGTAGAGAGGAATTTAGAGCAAGAGATGGACCAAAGGTTGTGGTGCGTATTCTAAATGATGGATTTGGGAACAGAGACATATTGTTCAGTGGCTTTGCTGTCGTTGCTGCTGCTTCAACGGGTAACAAGGATACAAAAGAGTCTTTCATGAACTTGAACATTGAAGAGCTTATTTTGCAAGCACTTTCAAAAAGTAGACACGCAAGAGGTGAAAGCAGCATTGACTTGAATGTCAGTTTATATGATGCCATACATATTCTCTTAACACCTGACGATACTCGTTTTCCGCCTTCCCAAATATGTGGTAATGCGCGGAAATTCGCCCAAACTGGAATTGTAGAAGTTCTGCTTCAAGTTATGAACACAGCAGCCCTATCTGAGCGTTTTTTAGCAGCCATCGCTTTGGACGCTATTGCTTTCAATAATAAAATATGTGCAATCATAATTCAAAAGGGTGGTACTGCTAGAGTTCTCTCCTGTCTTCAAAGCGTTCTCCCAGATATATTCGGTACTGACCAAGACAAAGCAGTAACAAAAGCTTGCTGTTCTTTGTTCTCCAAGTTGGCACGAAGTCCAATTCTTTCTGAGGAGAGTTTGGCTGAGGTTTCTAAACGGAGTTTGGCTGCGCTAGTTTACCTCAGCGGTACTCCATGTTATTCTGACTCTTCAGTCCTGCAAGAGATGATGTCTCTTATTTCAATACTCTCCCTAAAATCCCCTGCCTGTGCATTTGAAGCCGGGGTTGGAAAACTTACAATCAAGGTCATGAAGGATTTCCCTGCTGCACAAATACTACAATGGAGATGCTGTCTCATTATCCGGAATCTTGCTGTAAAAAACTCAGAAAACATAAAAATTATGGTCGAGAATGGTGTCGAAACATTGATAAGGCAGGCGAAGCAGACGCATGCAATCTGTAAGGATGCTGCGACAGACGCCCTAATGTGTCTGGAACTTGATGATTACTACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009987 GO:0030097 GO:0030154 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

372

Amino Acids

40.65

Weight (kDa)

7.44

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020583)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252951
rosa_rugosa	Rorug05G0541900 Rorug05G0542000 Rorug05G0542100
rosa_samantha	Rh6AG056100
rosa_wichuraiana	Rw6G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	374, 812
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	963
AciI	CCGC	3 cut(s)	431, 457, 786
AcsI	RAATTY	2 cut(s)	155, 461
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	1080
AfaI	GTAC	3 cut(s)	604, 655, 790
AflIII	ACRYGT	1 cut(s)	1113
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AluBI	AGCT	2 cut(s)	313, 683
AluI	AGCT	2 cut(s)	313, 683
Alw26I	GTCTC	3 cut(s)	213, 837, 959
Ama87I	CYCGRG	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	963
ApeKI	GCWGC	8 cut(s)	251, 254, 360, 512, 536, 767, 926, 1070
ApoI	RAATTY	2 cut(s)	155, 461
Asp700I	GAANNNNTTC	1 cut(s)	917
AspLEI	GCGC	2 cut(s)	457, 772
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	883
AsuHPI	GGTGA	2 cut(s)	53, 365
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	617
BbvCI	CCTCAGC	2 cut(s)	744, 782
BbvI	GCAGC	8 cut(s)	238, 241, 372, 524, 548, 754, 913, 1057
BccI	CCATC	3 cut(s)	164, 197, 548
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	883
BcoDI	GTCTC	3 cut(s)	213, 837, 959
BfaI	CTAG	2 cut(s)	609, 773
BfuI	GTATCC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	8 cut(s)	252, 255, 361, 513, 537, 768, 927, 1071
BlsI	GCNGC	8 cut(s)	253, 256, 362, 514, 538, 769, 928, 1072
Bme1390I	CCNGG	2 cut(s)	83, 883
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	83, 883
BmsI	GCATC	3 cut(s)	379, 938, 1057
BpiI	GAAGAC	1 cut(s)	617
Bpu10I	CCTNAGC	2 cut(s)	744, 782
BpuMI	CCSGG	1 cut(s)	883
BsaAI	YACGTR	1 cut(s)	1114
BsaHI	GRCGYC	1 cut(s)	1080
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	963
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bse1I	ACTGG	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	963
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	1 cut(s)	1072
BseMII	CTCAG	5 cut(s)	513, 720, 735, 796, 999
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	8 cut(s)	238, 241, 372, 524, 548, 754, 913, 1057
BsgI	GTGCAG	1 cut(s)	912
Bsh1236I	CGCG	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	882, 964
BsmAI	GTCTC	3 cut(s)	213, 837, 959
BsoBI	CYCGRG	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	963
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	3 cut(s)	431, 457, 786
BspCNI	CTCAG	5 cut(s)	514, 721, 736, 795, 998
BspEI	TCCGGA	1 cut(s)	963
BspFNI	CGCG	1 cut(s)	457
BspHI	TCATGA	3 cut(s)	133, 291, 909
BspLI	GGNNCC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	1080
Bst2UI	CCWGG	1 cut(s)	83
Bst6I	CTCTTC	2 cut(s)	303, 814
BstACI	GRCGYC	1 cut(s)	1080
BstBAI	YACGTR	1 cut(s)	1114
BstC8I	GCNNGC	4 cut(s)	324, 685, 1038, 1053
BstDEI	CTNAG	5 cut(s)	522, 729, 744, 782, 985
BstF5I	GGATG	1 cut(s)	1072
BstFNI	CGCG	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	457, 772
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	3 cut(s)	213, 837, 959
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 248, 319, 542, 551, 878, 1042, 1079
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	2 cut(s)	81, 881
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	8 cut(s)	238, 241, 372, 524, 548, 754, 913, 1057
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	446, 547
BstYI	RGATCY	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	1072
BtsIMutI	CAGTG	2 cut(s)	14, 238
Cac8I	GCNNGC	4 cut(s)	324, 685, 1038, 1053
CciI	TCATGA	3 cut(s)	133, 291, 909
CfoI	GCGC	2 cut(s)	457, 772
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	3 cut(s)	560, 1057, 1088
Csp6I	GTAC	3 cut(s)	603, 654, 789
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	6 cut(s)	118, 134, 292, 795, 910, 1052
CviQI	GTAC	3 cut(s)	603, 654, 789
DdeI	CTNAG	5 cut(s)	522, 729, 744, 782, 985
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DrdI	GACNNNNNNGTC	2 cut(s)	374, 812
DseDI	GACNNNNNNGTC	2 cut(s)	374, 812
Eam1104I	CTCTTC	2 cut(s)	303, 814
EarI	CTCTTC	2 cut(s)	303, 814
EciI	GGCGGA	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	6 cut(s)	121, 137, 295, 798, 913, 1055
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	6 cut(s)	117, 133, 291, 794, 909, 1051
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	8 cut(s)	252, 255, 361, 513, 537, 768, 927, 1071
FokI	GGATG	1 cut(s)	1079
Fsp4HI	GCNGC	8 cut(s)	252, 255, 361, 513, 537, 768, 927, 1071
FspBI	CTAG	2 cut(s)	609, 773
GlaI	GCGC	2 cut(s)	456, 771
GluI	GCNGC	8 cut(s)	252, 255, 361, 513, 537, 768, 927, 1071
HapII	CCGG	2 cut(s)	882, 964
HgaI	GACGC	3 cut(s)	560, 1057, 1088
HhaI	GCGC	2 cut(s)	457, 772
Hin1I	GRCGYC	1 cut(s)	1080
Hin1II	CATG	6 cut(s)	121, 137, 295, 798, 913, 1055
Hin6I	GCGC	2 cut(s)	455, 770
HinP1I	GCGC	2 cut(s)	455, 770
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	4 cut(s)	4, 284, 806, 967
HpaII	CCGG	2 cut(s)	882, 964
HphI	GGTGA	2 cut(s)	53, 365
Hpy166II	GTNNAC	2 cut(s)	341, 778
Hpy188I	TCNGA	4 cut(s)	523, 730, 805, 988
Hpy188III	TCNNGA	7 cut(s)	92, 134, 292, 910, 964, 1009, 1094
Hpy8I	GTNNAC	2 cut(s)	341, 778
HpyAV	CCTTC	2 cut(s)	444, 907
HpyCH4IV	ACGT	1 cut(s)	1113
HpyCH4V	TGCA	7 cut(s)	142, 322, 581, 820, 872, 929, 1055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 248, 319, 542, 551, 878, 1042, 1079
HpyF3I	CTNAG	5 cut(s)	522, 729, 744, 782, 985
HpySE526I	ACGT	1 cut(s)	1113
Hsp92I	GRCGYC	1 cut(s)	1080
Hsp92II	CATG	6 cut(s)	121, 137, 295, 798, 913, 1055
HspAI	GCGC	2 cut(s)	455, 770
Kpn2I	TCCGGA	1 cut(s)	963
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	303
Lsp1109I	GCAGC	8 cut(s)	238, 241, 372, 524, 548, 754, 913, 1057
LweI	GCATC	3 cut(s)	379, 938, 1057
MaeI	CTAG	2 cut(s)	609, 773
MaeII	ACGT	1 cut(s)	1113
MaeIII	GTNAC	2 cut(s)	266, 673
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	5 cut(s)	122, 124, 320, 617, 801
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	6 cut(s)	155, 461, 477, 588, 720, 999
MlyI	GAGTC	2 cut(s)	293, 800
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	5 cut(s)	145, 344, 724, 739, 791
MroI	TCCGGA	1 cut(s)	963
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	786
MspI	CCGG	2 cut(s)	882, 964
MspR9I	CCNGG	2 cut(s)	83, 883
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	8 cut(s)	18, 248, 319, 542, 551, 878, 1042, 1079
NciI	CCSGG	1 cut(s)	883
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	6 cut(s)	121, 137, 295, 798, 913, 1055
NlaIV	GGNNCC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	1055
PaeI	GCATGC	1 cut(s)	1055
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	3 cut(s)	133, 291, 909
PciSI	GCTCTTC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	4, 967
PkrI	GCNGC	8 cut(s)	253, 256, 362, 514, 538, 769, 928, 1072
PleI	GAGTC	2 cut(s)	292, 800
PpsI	GAGTC	2 cut(s)	292, 800
Ppu21I	YACGTR	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	3 cut(s)	604, 655, 790
RsaNI	GTAC	3 cut(s)	603, 654, 789
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	8 cut(s)	252, 255, 361, 513, 537, 768, 927, 1071
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	293, 800
ScrFI	CCNGG	2 cut(s)	83, 883
SfaNI	GCATC	3 cut(s)	379, 938, 1057
Sfr274I	CTCGAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	1055
Sse9I	AATT	6 cut(s)	155, 461, 477, 588, 720, 999
SsiI	CCGC	3 cut(s)	431, 457, 786
SspMI	CTAG	2 cut(s)	609, 773
StyD4I	CCNGG	2 cut(s)	81, 881
TaiI	ACGT	1 cut(s)	1116
TaqI	TCGA	3 cut(s)	91, 1008, 1020
TasI	AATT	6 cut(s)	155, 461, 477, 588, 720, 999
TfiI	GAWTC	2 cut(s)	4, 967
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	14, 238
TseI	GCWGC	8 cut(s)	251, 254, 360, 512, 536, 767, 926, 1070
TspDTI	ATGAA	6 cut(s)	114, 122, 280, 308, 518, 926
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	2 cut(s)	14, 238
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	155, 461
XceI	RCATGY	1 cut(s)	1055
XhoI	CTCGAG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	609, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.