Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020583

Physical Location & Seq

Genomic Coordinates Forward (+)

8282390 .. 8286255

Gene Structure 3866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGAGTCTCGAGAGAACACAAGGGGAGATTACTGAAGAAACCTCAACTTCTCAGGGCGGCGCCGTATTCTCTGGCGCTGTCACCGGTGTGCCAGGAGAGGATAGTGTGAAGAAAAACCCTATGTACCCTCTGATTCAGTGCTTGGAAAGACTAAAGCAGTTGAGTTCTGGTGAAAGCAATCAAAAAAGCGACGAGGATACTCAAGATCTTGTTTTGGGCTTGAAGAACATGGCTTCATATCTTCATGATTTGCAAAGTAGAGAGGAATTTAGAGCAAGAGATGGACCAAATGTTGTGGTGCGTATTCTAAATGATGGATTTGGGAACAGAGACATATTGTTCAGTGGCTTTGCTGTCGTTGCTGCTGCTTCAACGGGTAACAAGGATACAAAAAAGTCTTTCATGAACTTGAAAATTGAAGAGCTTATTTCGCAAGCACTTACAAAAAGTATAGACACAAGAGGTGAAAGCAGCATTGACTTGAATGTCAGTTTATATGATGCCATACATATTCTCTTGACACCTGACGATACTCGCTTTCCGCCTTCCCAAATATGTGGTAATGCGCGGAAATTCGCCCAAACTGGAATTGTAGAAGTTCTGCTTCAAGTTATGAACACAACAGTCCTATCTAAGCGTTTTTTAGCAGCCATCGCTTTGGACGCTATTGCTGTCAATGATAAAATATGTGCAATCATATTTCAAAAGGGTGGTACTGCTAGAGTTCTCTCCTGTCTTCAAAGCATTCTCCCAGATACTGAATTCAGCACTGACCCAGACAAAACAGTAACAAAAGCTTGCTGTTCTTTGCTCTCCAAGTTGGCAGGAATGGACACCGATGACATTATTTCTGAGGAGAGTTTGGGTACGCTAGTCTACCTCAGCGGGACTCCATGTTATTATGACTCTTCAGTCCTGCAAGAGATGATGTCTCTTATTTCAATACTCTCCCTAAAATCCCCTGCCTGTGCATTTGAAGCCGGGGTTGGAAAACTTACAATCAAGGTCATGAAGGATTTCCCTGCTGCACAAATACTGCAATGGAGATGCTGTCTCATTATCCGGAATCTTGCTGTAAAAAACTCAGAAAACATAAAAATTATGCTCGAGAATGGTGTCGAAACATTGATAAGGCAGGCGAAGCAAACGCATGCATTCTGTAAGGATGCTGCGACAGACGCCTTAGGGCGTCTGGAACTTGATGATTACTACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009987 GO:0030097 GO:0030154 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

406

Amino Acids

44.28

Weight (kDa)

4.99

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020583)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252951
rosa_rugosa	Rorug05G0541900 Rorug05G0542000 Rorug05G0542100
rosa_samantha	Rh6AG056100
rosa_wichuraiana	Rw6G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	488, 914
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	879
AccII	CGCG	1 cut(s)	571
AccIII	TCCGGA	1 cut(s)	1065
AciI	CCGC	4 cut(s)	60, 545, 571, 888
AcsI	RAATTY	3 cut(s)	269, 575, 764
AcuI	CTGAAG	2 cut(s)	57, 897
AcyI	GRCGYC	3 cut(s)	63, 1182, 1192
AfaI	GTAC	3 cut(s)	128, 718, 871
AflIII	ACRYGT	1 cut(s)	1215
AgeI	ACCGGT	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	427, 800
AluI	AGCT	2 cut(s)	427, 800
Alw26I	GTCTC	4 cut(s)	14, 327, 939, 1061
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	2 cut(s)	11, 1109
Aor13HI	TCCGGA	1 cut(s)	1065
ApeKI	GCWGC	6 cut(s)	365, 368, 474, 650, 1028, 1172
ApoI	RAATTY	3 cut(s)	269, 575, 764
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	1019
AspLEI	GCGC	3 cut(s)	65, 80, 571
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	985
AsuHPI	GGTGA	3 cut(s)	76, 185, 479
AvaI	CYCGRG	2 cut(s)	11, 1109
AvaII	GGWCC	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	1186
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	731
BbvCI	CCTCAGC	1 cut(s)	884
BbvI	GCAGC	6 cut(s)	352, 355, 486, 662, 1015, 1159
BccI	CCATC	3 cut(s)	278, 311, 662
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	2 cut(s)	193, 382
BcnI	CCSGG	1 cut(s)	985
BcoDI	GTCTC	4 cut(s)	14, 327, 939, 1061
BfaI	CTAG	2 cut(s)	723, 875
BfoI	RGCGCY	2 cut(s)	66, 81
BfuI	GTATCC	2 cut(s)	193, 382
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	7 cut(s)	61, 366, 369, 475, 651, 1029, 1173
BlsI	GCNGC	7 cut(s)	62, 367, 370, 476, 652, 1030, 1174
Bme1390I	CCNGG	2 cut(s)	96, 985
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	2 cut(s)	11, 1109
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	96, 985
BmsI	GCATC	3 cut(s)	493, 1040, 1159
BpiI	GAAGAC	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	985
BsaAI	YACGTR	1 cut(s)	1216
BsaHI	GRCGYC	3 cut(s)	63, 1182, 1192
BsaJI	CCNNGG	1 cut(s)	984
BsaWI	WCCGGW	2 cut(s)	86, 1065
BsaXI	ACNNNNNCTCC	2 cut(s)	1039, 1069
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	592
Bse21I	CCTNAGG	1 cut(s)	1186
Bse3DI	GCAATG	1 cut(s)	1049
BseAI	TCCGGA	1 cut(s)	1065
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	984
BseGI	GGATG	1 cut(s)	1174
BseMI	GCAATG	1 cut(s)	1049
BseMII	CTCAG	4 cut(s)	68, 846, 898, 1101
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	6 cut(s)	352, 355, 486, 662, 1015, 1159
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	571
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	86
BsiHKCI	CYCGRG	2 cut(s)	11, 1109
BsiSI	CCGG	3 cut(s)	87, 984, 1066
BslFI	GGGAC	1 cut(s)	904
BsmAI	GTCTC	4 cut(s)	14, 327, 939, 1061
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	2 cut(s)	747, 1157
BsoBI	CYCGRG	2 cut(s)	11, 1109
Bsp13I	TCCGGA	1 cut(s)	1065
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	4 cut(s)	60, 545, 571, 888
BspCNI	CTCAG	4 cut(s)	67, 847, 897, 1100
BspEI	TCCGGA	1 cut(s)	1065
BspFNI	CGCG	1 cut(s)	571
BspHI	TCATGA	3 cut(s)	247, 405, 1011
BspLI	GGNNCC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	1049
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	984
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	3 cut(s)	63, 1182, 1192
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	628, 790
Bst6I	CTCTTC	2 cut(s)	417, 916
BstACI	GRCGYC	3 cut(s)	63, 1182, 1192
BstBAI	YACGTR	1 cut(s)	1216
BstC8I	GCNNGC	4 cut(s)	438, 802, 1140, 1155
BstDEI	CTNAG	6 cut(s)	54, 636, 855, 884, 1087, 1186
BstF5I	GGATG	1 cut(s)	1174
BstFNI	CGCG	1 cut(s)	571
BstH2I	RGCGCY	2 cut(s)	66, 81
BstHHI	GCGC	3 cut(s)	65, 80, 571
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	4 cut(s)	14, 327, 939, 1061
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	7 cut(s)	362, 433, 656, 665, 980, 1144, 1181
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	1157
BstSCI	CCNGG	2 cut(s)	94, 983
BstUI	CGCG	1 cut(s)	571
BstV1I	GCAGC	6 cut(s)	352, 355, 486, 662, 1015, 1159
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	2 cut(s)	560, 661
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	1186
BsuI	GTATCC	2 cut(s)	193, 382
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	1174
BtsIMutI	CAGTG	3 cut(s)	146, 352, 771
Cac8I	GCNNGC	4 cut(s)	438, 802, 1140, 1155
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	3 cut(s)	247, 405, 1011
CfoI	GCGC	3 cut(s)	65, 80, 571
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	3 cut(s)	674, 1181, 1190
Csp6I	GTAC	3 cut(s)	127, 717, 870
CspAI	ACCGGT	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	6 cut(s)	232, 248, 406, 897, 1012, 1154
CviJI	RGCY	7 cut(s)	222, 236, 351, 427, 653, 800, 983
CviKI_1	RGCY	7 cut(s)	222, 236, 351, 427, 653, 800, 983
CviQI	GTAC	3 cut(s)	127, 717, 870
DdeI	CTNAG	6 cut(s)	54, 636, 855, 884, 1087, 1186
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DrdI	GACNNNNNNGTC	2 cut(s)	488, 914
DseDI	GACNNNNNNGTC	2 cut(s)	488, 914
Eam1104I	CTCTTC	2 cut(s)	417, 916
EarI	CTCTTC	2 cut(s)	417, 916
EciI	GGCGGA	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	57, 897
Eco81I	CCTNAGG	1 cut(s)	1186
Eco88I	CYCGRG	2 cut(s)	11, 1109
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	1159
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaeI	CATG	6 cut(s)	235, 251, 409, 900, 1015, 1157
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	6 cut(s)	231, 247, 405, 896, 1011, 1153
FauI	CCCGC	1 cut(s)	881
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	7 cut(s)	61, 366, 369, 475, 651, 1029, 1173
FokI	GGATG	1 cut(s)	1181
Fsp4HI	GCNGC	7 cut(s)	61, 366, 369, 475, 651, 1029, 1173
FspBI	CTAG	2 cut(s)	723, 875
GlaI	GCGC	3 cut(s)	64, 79, 570
GluI	GCNGC	7 cut(s)	61, 366, 369, 475, 651, 1029, 1173
HaeII	RGCGCY	2 cut(s)	66, 81
HapII	CCGG	3 cut(s)	87, 984, 1066
HgaI	GACGC	3 cut(s)	674, 1181, 1190
HhaI	GCGC	3 cut(s)	65, 80, 571
Hin1I	GRCGYC	3 cut(s)	63, 1182, 1192
Hin1II	CATG	6 cut(s)	235, 251, 409, 900, 1015, 1157
Hin6I	GCGC	3 cut(s)	63, 78, 569
HinP1I	GCGC	3 cut(s)	63, 78, 569
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	5 cut(s)	7, 136, 892, 908, 1069
HpaII	CCGG	3 cut(s)	87, 984, 1066
HphI	GGTGA	3 cut(s)	76, 185, 479
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188I	TCNGA	3 cut(s)	135, 856, 1090
Hpy8I	GTNNAC	1 cut(s)	880
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	558, 1009
HpyCH4III	ACNGT	2 cut(s)	628, 790
HpyCH4IV	ACGT	1 cut(s)	1215
HpyCH4V	TGCA	7 cut(s)	256, 695, 922, 974, 1031, 1042, 1157
HpyF10VI	GCNNNNNNNGC	7 cut(s)	362, 433, 656, 665, 980, 1144, 1181
HpyF3I	CTNAG	6 cut(s)	54, 636, 855, 884, 1087, 1186
HpySE526I	ACGT	1 cut(s)	1215
Hsp92I	GRCGYC	3 cut(s)	63, 1182, 1192
Hsp92II	CATG	6 cut(s)	235, 251, 409, 900, 1015, 1157
HspAI	GCGC	3 cut(s)	63, 78, 569
KasI	GGCGCC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	1065
Kzo9I	GATC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	417
Lsp1109I	GCAGC	6 cut(s)	352, 355, 486, 662, 1015, 1159
LweI	GCATC	3 cut(s)	493, 1040, 1159
MaeI	CTAG	2 cut(s)	723, 875
MaeII	ACGT	1 cut(s)	1215
MaeIII	GTNAC	3 cut(s)	82, 380, 790
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	7 cut(s)	50, 124, 236, 238, 434, 731, 903
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	6 cut(s)	269, 417, 575, 591, 764, 1101
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	16, 886, 902
MmeI	TCCRAC	1 cut(s)	970
MnlI	CCTC	8 cut(s)	55, 94, 141, 190, 259, 458, 850, 893
Mph1103I	ATGCAT	1 cut(s)	1159
MroI	TCCGGA	1 cut(s)	1065
MroXI	GAANNNNTTC	1 cut(s)	1019
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	888
MspI	CCGG	3 cut(s)	87, 984, 1066
MspR9I	CCNGG	2 cut(s)	96, 985
Mva1269I	GAATGC	2 cut(s)	747, 1157
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	7 cut(s)	362, 433, 656, 665, 980, 1144, 1181
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	985
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	6 cut(s)	235, 251, 409, 900, 1015, 1157
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	1 cut(s)	1157
OliI	CACNNNNGTG	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	1157
PaeR7I	CTCGAG	2 cut(s)	11, 1109
PagI	TCATGA	3 cut(s)	247, 405, 1011
PciSI	GCTCTTC	1 cut(s)	417
PctI	GAATGC	2 cut(s)	747, 1157
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	2 cut(s)	136, 1069
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	7 cut(s)	62, 367, 370, 476, 652, 1030, 1174
PleI	GAGTC	3 cut(s)	15, 886, 902
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	3 cut(s)	15, 886, 902
Ppu21I	YACGTR	1 cut(s)	1216
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	128, 718, 871
RsaNI	GTAC	3 cut(s)	127, 717, 870
RseI	CAYNNNNRTG	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	7 cut(s)	61, 366, 369, 475, 651, 1029, 1173
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	3 cut(s)	16, 886, 902
ScrFI	CCNGG	2 cut(s)	96, 985
SetI	ASST	8 cut(s)	47, 429, 469, 529, 802, 885, 1011, 1218
SfaNI	GCATC	3 cut(s)	493, 1040, 1159
SfoI	GGCGCC	1 cut(s)	64
Sfr274I	CTCGAG	2 cut(s)	11, 1109
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	287
SlaI	CTCGAG	2 cut(s)	11, 1109
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	11, 204, 1109
SmoI	CTYRAG	3 cut(s)	11, 204, 1109
SphI	GCATGC	1 cut(s)	1157
Sse9I	AATT	6 cut(s)	269, 417, 575, 591, 764, 1101
SsiI	CCGC	4 cut(s)	60, 545, 571, 888
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	723, 875
StyD4I	CCNGG	2 cut(s)	94, 983
TaaI	ACNGT	2 cut(s)	628, 790
TaiI	ACGT	1 cut(s)	1218
TaqI	TCGA	3 cut(s)	12, 1110, 1122
TasI	AATT	6 cut(s)	269, 417, 575, 591, 764, 1101
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	136, 1069
TscAI	CASTG	3 cut(s)	146, 352, 778
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	6 cut(s)	365, 368, 474, 650, 1028, 1172
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	6 cut(s)	228, 236, 394, 422, 632, 1028
TspRI	CASTG	3 cut(s)	146, 352, 778
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	3 cut(s)	269, 575, 764
XceI	RCATGY	1 cut(s)	1157
XhoI	CTCGAG	2 cut(s)	11, 1109
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	1019
XspI	CTAG	2 cut(s)	723, 875
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.