Rorug05G0542100

Armadillo repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
73038638 .. 73039803
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0542100.1

Sequence Viewer

Length: 381 bp
ATGGAAGATGTGCATGATGATGTGGGTGGTGAATTTCGTGGTGGAGAAATGGCTGTCTCGGAGTCTGATGCTCATGAATCGGACTACGCGGTACAGAACAGTGAAGTAGATGATACCACTGATGTTCAAGCAAGCAGAGGAGAAGACTTCCAAGGACTGCAGCATTACAGAAAAAGGATCTTTATATTACAAGTTTCAATGCAACAAAGATCAGTGAAGACAACTATTCATCATTTTCAGTTGCTTGAGCAGGAAATTGATTTCTTTAGTGCGATATCTGGCATATCATTCAGTCCAGACACAGAGTCGCTTTTCATTGGAGTACGGGATCTTACGTATGGTTGTCTTCTCCAGTATGGAACACAAAAGTGTGTTGCTTAA

Protein Analysis

126

Amino Acids

14.19

Weight (kDa)

4.48

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252951
rosa_rugosa Rorug05G0541900 Rorug05G0542000 Rorug05G0542100
rosa_samantha Rh6AG056100
rosa_wichuraiana Rw6G005120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 1 cut(s) 89
AclWI GGATC 2 cut(s) 185, 336
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 2 cut(s) 93, 324
AgsI TTSAA 2 cut(s) 128, 198
AhdI GACNNNNNGTC 1 cut(s) 304
AleI CACNNNNGTG 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 185, 336
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 41
BbsI GAAGAC 3 cut(s) 150, 224, 338
BbvI GCAGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmeRI GACNNNNNGTC 1 cut(s) 304
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 3 cut(s) 150, 224, 338
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 177, 209, 328
BspACI CCGC 1 cut(s) 89
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 2 cut(s) 185, 336
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 177, 209, 328
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 133
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 3 cut(s) 180, 212, 331
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 177, 209, 328
BstSFI CTRYAG 1 cut(s) 158
BstSNI TACGTA 1 cut(s) 336
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 3 cut(s) 150, 224, 338
BstX2I RGATCY 2 cut(s) 177, 328
BstYI RGATCY 2 cut(s) 177, 328
BtsIMutI CAGTG 3 cut(s) 106, 117, 219
Cac8I GCNNGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 73
Csp6I GTAC 2 cut(s) 92, 323
CviAII CATG 2 cut(s) 14, 74
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
CviQI GTAC 2 cut(s) 92, 323
DpnI GATC 3 cut(s) 179, 211, 330
DpnII GATC 3 cut(s) 177, 209, 328
DriI GACNNNNNGTC 1 cut(s) 304
Eam1105I GACNNNNNGTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 151
Eco32I GATATC 1 cut(s) 276
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 17, 77
FaiI YATR 6 cut(s) 15, 75, 185, 284, 339, 357
FatI CATG 2 cut(s) 13, 73
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 335
Hin1II CATG 2 cut(s) 17, 77
HinfI GANTC 3 cut(s) 62, 77, 305
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 61, 67, 82
Hpy188III TCNNGA 2 cut(s) 74, 296
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 13, 160, 202
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 2 cut(s) 17, 77
Kzo9I GATC 3 cut(s) 177, 209, 328
LpnPI CCDG 4 cut(s) 236, 264, 309, 365
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 335
MalI GATC 3 cut(s) 179, 211, 330
MboI GATC 3 cut(s) 177, 209, 328
MboII GAAGA 4 cut(s) 17, 155, 229, 338
MflI RGATCY 2 cut(s) 177, 328
MluCI AATT 2 cut(s) 32, 255
MlyI GAGTC 2 cut(s) 71, 314
MnlI CCTC 1 cut(s) 131
MseI TTAA 1 cut(s) 379
MslI CAYNNNNRTG 2 cut(s) 18, 367
MvnI CGCG 1 cut(s) 89
NdeII GATC 3 cut(s) 177, 209, 328
NlaIII CATG 2 cut(s) 17, 77
OliI CACNNNNGTG 1 cut(s) 367
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 2 cut(s) 70, 313
PpsI GAGTC 2 cut(s) 70, 313
Ppu21I YACGTR 1 cut(s) 336
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 2 cut(s) 177, 328
RsaI GTAC 2 cut(s) 93, 324
RsaNI GTAC 2 cut(s) 92, 323
RseI CAYNNNNRTG 2 cut(s) 18, 367
SaqAI TTAA 1 cut(s) 379
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 177, 209, 328
SchI GAGTC 2 cut(s) 71, 314
SetI ASST 1 cut(s) 338
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 18, 367
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 336
Sse9I AATT 2 cut(s) 32, 255
SsiI CCGC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 338
TasI AATT 2 cut(s) 32, 255
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 3 cut(s) 106, 124, 219
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 90, 218, 304
TspRI CASTG 3 cut(s) 106, 124, 219
XapI RAATTY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.