Rorug05G0542000

Armadillo repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0020583
Physical Location & Seq
Reverse (-)
73025129 .. 73027868
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0542000.1

Sequence Viewer

Length: 1329 bp
ATGTCCCACTACGCTGGTTACGTGGAAGATGAATATGAAATGGAAGATGTAGATGATGATATGGATGACGAATTTCGTGGAAGAGACCTGGCTGGCTCCGAGTCTGATGTTGATGAATTTGAATATGCGAATAGTAAAGTAGCTGATACAACTGCTGCTCAAGCAAGAAGAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGGCAAACTAGGTTAGAACAGTACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGTCAGGGAAGGATTGCAACATTACAAAGAAGGGATCTGTATATTATGAGTTTAGACGTAATGCAAGATCAGTGAAATCAACTATTCTTCATTTTCAGTTGCGGAACTTGGTCTGGGCTACATCAAAGCATGATGTCTACCTTATGTCACATTTTTCTGTCATTCATTGGTCTTCATTGAATTGCAACAAGTCTGAGGTTCTAAATGTTTCAGGACATGTGGCACCATCAGAGAAACATCCTGGGAGTCTCTTGGAGGGATTTACGCAGACTCAAGTTAGTACTCTTGCAGTAAAAGATAAGTTGCTAGTTGCTGGAGGATTCCAGGGAGAACTTATTTGTAAGCATCTTGATCGGCCTGGAGTTAGCTTTTGTTCAAGGACAACTTACGATGATAATGCCATTACAAATGCTGTTGAGATTTATGATGGTCCCAGTGGTGCAGTTCACTTTACAGCATCAAATAATGATTGTGGAGTCCGAGACTTTGACATGGAGAAATTTCAGCTTTCTAAGCATTTCCGTTTTCCTTGGCCAGTGAATCATACTTCTTTGAGTCCCAATGGCAAACTTCTTGTGATTGTTGGTGACAATCCAGATGGGATGTTGGTGGACTCTCAGACTGGAAAGACAGTGACGGCTTTATCTGGGCACTTGGATTTCTCATTTGCATCAGCGTGGCATCCTGATGGTATCACCTTTGCTACTGGGAACCAGGACAAAACTTGTCGGGTTTGGGATGTTCGAAACCTATCTAAGTCGGTTGCTGTTTTAAAGGGAAACCTTGGAGCTATTCGGTCAATCCGTTATACTTCTGATGGTCGGTATATGATGATGGCAGAGCCAGCAGACTTTGTGCATGTCTATGATGTGAAAAGTGGGTATGAGAAGGAGCAGGAAATCGACTTCTTTGGTGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCACTTTTCATTGGAGTGTGGGATCGTACGTATGGTAGTCTTCTCGAGTATGGACGACACCGGGACTACTCTTACCTAGATTCTCTTATTTAA

Protein Analysis

442

Amino Acids

49.74

Weight (kDa)

5.34

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 194 - 389 1.3e-15 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 244 - 391 1.5e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 246 - 347 4.2e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 248 - 414 1.4e-18 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 248 - 422 1.2e-14 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 248 - 344 6.1e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 257 - 386 1.1e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 275 - 421 5.5e-10 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 277 - 414 2.3e-08 CDC20/Fizzy WD40 domain
WDR55 PF24796 277 - 389 4.2e-08 WDR55
WD40 PF00400 305 - 342 7.4e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020583)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252951
rosa_rugosa Rorug05G0541900 Rorug05G0542000 Rorug05G0542100
rosa_samantha Rh6AG056100
rosa_wichuraiana Rw6G005120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 423
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 1 cut(s) 388
AclWI GGATC 2 cut(s) 328, 1266
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 3 cut(s) 71, 116, 785
AfaI GTAC 3 cut(s) 251, 568, 1264
AfiI CCNNNNNNNGG 2 cut(s) 278, 285
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 3 cut(s) 122, 466, 663
AhdI GACNNNNNGTC 1 cut(s) 1234
AjnI CCWGG 5 cut(s) 87, 526, 609, 643, 999
AluBI AGCT 4 cut(s) 143, 654, 793, 1076
AluI AGCT 4 cut(s) 143, 654, 793, 1076
Alw26I GTCTC 3 cut(s) 78, 539, 762
AlwI GGATC 2 cut(s) 328, 1266
Ama87I CYCGRG 1 cut(s) 1280
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 641, 818
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 71, 116, 785
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 1 cut(s) 1298
AsuHPI GGTGA 3 cut(s) 884, 973, 1211
AsuII TTCGAA 1 cut(s) 1030
AvaI CYCGRG 1 cut(s) 1280
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 939
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 450, 1268
BbvI GCAGC 1 cut(s) 142
BccI CCATC 6 cut(s) 520, 707, 878, 968, 1097, 1114
BceAI ACGGC 1 cut(s) 939
BcgI CGANNNNNNTGC 4 cut(s) 620, 654, 665, 699
BciT130I CCWGG 5 cut(s) 89, 528, 611, 645, 1001
BcnI CCSGG 1 cut(s) 1298
BcoDI GTCTC 3 cut(s) 78, 539, 762
BfaI CTAG 4 cut(s) 216, 237, 593, 1313
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 6 cut(s) 89, 528, 611, 645, 1001, 1298
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 1234
BmeT110I CYCGRG 1 cut(s) 1280
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 4 cut(s) 97, 510, 718, 998
BmrFI CCNGG 6 cut(s) 89, 528, 611, 645, 1001, 1298
BmrI ACTGGG 2 cut(s) 714, 1002
BmsI GCATC 4 cut(s) 640, 752, 965, 976
BmuI ACTGGG 2 cut(s) 714, 1002
BpiI GAAGAC 2 cut(s) 450, 1268
BpmI CTGGAG 2 cut(s) 621, 666
Bpu14I TTCGAA 1 cut(s) 1030
BpuEI CTTGAG 2 cut(s) 144, 543
BpuMI CCSGG 1 cut(s) 1298
BsaAI YACGTR 2 cut(s) 22, 1266
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 184, 194, 527, 610, 815, 1069
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 285
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 4 cut(s) 720, 821, 913, 997
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 5 cut(s) 89, 528, 611, 645, 1001
BseDI CCNNGG 6 cut(s) 184, 194, 527, 610, 815, 1069
BseGI GGATG 7 cut(s) 70, 180, 267, 523, 894, 967, 1030
BseLI CCNNNNNNNGG 2 cut(s) 278, 285
BseMII CTCAG 2 cut(s) 471, 917
BseNI ACTGG 4 cut(s) 720, 821, 913, 997
BseSI GKGCMC 1 cut(s) 939
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 643, 820
BshNI GGYRCC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 1280
BsiSI CCGG 3 cut(s) 229, 279, 1297
BsiWI CGTACG 1 cut(s) 1262
BslFI GGGAC 3 cut(s) 702, 828, 1313
BslI CCNNNNNNNGG 2 cut(s) 278, 285
BsmAI GTCTC 3 cut(s) 78, 539, 762
BsmFI GGGAC 3 cut(s) 702, 828, 1313
BsnI GGCC 2 cut(s) 643, 820
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 1280
Bsp119I TTCGAA 1 cut(s) 1030
Bsp1286I GDGCHC 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 4 cut(s) 320, 353, 637, 1258
BspACI CCGC 1 cut(s) 388
BspANI GGCC 2 cut(s) 643, 820
BspCNI CTCAG 2 cut(s) 472, 916
BspEI TCCGGA 1 cut(s) 278
BspLI GGNNCC 4 cut(s) 97, 510, 718, 998
BspPI GGATC 2 cut(s) 328, 1266
BspT104I TTCGAA 1 cut(s) 1030
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 4 cut(s) 720, 821, 913, 997
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 6 cut(s) 184, 194, 527, 610, 815, 1069
BssMI GATC 4 cut(s) 320, 353, 637, 1258
BssT1I CCWWGG 4 cut(s) 184, 194, 815, 1069
Bst2UI CCWGG 5 cut(s) 89, 528, 611, 645, 1001
Bst4CI ACNGT 2 cut(s) 249, 919
Bst6I CTCTTC 2 cut(s) 76, 163
BstBAI YACGTR 2 cut(s) 22, 1266
BstBI TTCGAA 1 cut(s) 1030
BstC8I GCNNGC 2 cut(s) 94, 1131
BstDEI CTNAG 5 cut(s) 206, 480, 798, 903, 1041
BstF5I GGATG 7 cut(s) 70, 180, 267, 523, 894, 967, 1030
BstKTI GATC 4 cut(s) 323, 356, 640, 1261
BstMAI GTCTC 3 cut(s) 78, 539, 762
BstMBI GATC 4 cut(s) 320, 353, 637, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
BstNI CCWGG 5 cut(s) 89, 528, 611, 645, 1001
BstNSI RCATGY 2 cut(s) 506, 1148
BstSCI CCNGG 6 cut(s) 87, 526, 609, 643, 999, 1296
BstSLI GKGCMC 1 cut(s) 939
BstSNI TACGTA 1 cut(s) 1266
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 450, 1268
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 2 cut(s) 643, 820
BtsCI GGATG 7 cut(s) 70, 180, 267, 523, 894, 967, 1030
BtsIMutI CAGTG 4 cut(s) 363, 727, 828, 924
Cac8I GCNNGC 2 cut(s) 94, 1131
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 716
Csp6I GTAC 3 cut(s) 250, 567, 1263
CviAII CATG 4 cut(s) 416, 503, 778, 1145
CviQI GTAC 3 cut(s) 250, 567, 1263
DdeI CTNAG 5 cut(s) 206, 480, 798, 903, 1041
DpnI GATC 4 cut(s) 322, 355, 639, 1260
DpnII GATC 4 cut(s) 320, 353, 637, 1258
DraI TTTAAA 1 cut(s) 1059
DriI GACNNNNNGTC 1 cut(s) 1234
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 2 cut(s) 76, 163
Eam1105I GACNNNNNGTC 1 cut(s) 1234
EarI CTCTTC 2 cut(s) 76, 163
Eco105I TACGTA 1 cut(s) 1266
Eco130I CCWWGG 4 cut(s) 184, 194, 815, 1069
Eco31I GGTCTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 1280
EcoRII CCWGG 5 cut(s) 87, 526, 609, 643, 999
EcoRV GATATC 1 cut(s) 1206
EcoT14I CCWWGG 4 cut(s) 184, 194, 815, 1069
ErhI CCWWGG 4 cut(s) 184, 194, 815, 1069
FaeI CATG 4 cut(s) 419, 506, 781, 1148
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 3 cut(s) 702, 828, 1313
FatI CATG 4 cut(s) 415, 502, 777, 1144
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 7 cut(s) 77, 167, 254, 510, 901, 954, 1037
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 4 cut(s) 216, 237, 593, 1313
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 621, 666
HaeIII GGCC 2 cut(s) 643, 820
HapII CCGG 3 cut(s) 229, 279, 1297
Hin1II CATG 4 cut(s) 419, 506, 781, 1148
HpaII CCGG 3 cut(s) 229, 279, 1297
HphI GGTGA 3 cut(s) 884, 973, 1211
Hpy166II GTNNAC 3 cut(s) 424, 733, 898
Hpy188I TCNGA 7 cut(s) 100, 106, 481, 517, 767, 906, 1102
Hpy188III TCNNGA 7 cut(s) 279, 498, 635, 881, 971, 1226, 1280
Hpy8I GTNNAC 3 cut(s) 424, 733, 898
HpyAV CCTTC 4 cut(s) 278, 289, 310, 1168
HpyCH4III ACNGT 2 cut(s) 249, 919
HpyCH4IV ACGT 3 cut(s) 21, 343, 1265
HpyCH4V TGCA 7 cut(s) 303, 350, 471, 575, 728, 956, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
HpyF3I CTNAG 5 cut(s) 206, 480, 798, 903, 1041
HpySE526I ACGT 3 cut(s) 21, 343, 1265
Hsp92II CATG 4 cut(s) 419, 506, 781, 1148
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 4 cut(s) 320, 353, 637, 1258
LmnI GCTCC 3 cut(s) 101, 1073, 1177
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 4 cut(s) 640, 752, 965, 976
MaeI CTAG 4 cut(s) 216, 237, 593, 1313
MaeII ACGT 3 cut(s) 21, 343, 1265
MaeIII GTNAC 5 cut(s) 17, 432, 872, 919, 1236
MalI GATC 4 cut(s) 322, 355, 639, 1260
MboI GATC 4 cut(s) 320, 353, 637, 1258
MboII GAAGA 7 cut(s) 38, 56, 93, 180, 365, 450, 1268
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 939
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 6 cut(s) 71, 116, 256, 274, 466, 785
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 7 cut(s) 110, 541, 550, 771, 850, 893, 1244
MnlI CCTC 4 cut(s) 164, 475, 535, 596
Mox20I TGGCCA 1 cut(s) 820
MroI TCCGGA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 820
MseI TTAA 2 cut(s) 1058, 1327
MslI CAYNNNNRTG 4 cut(s) 961, 972, 1149, 1250
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 3 cut(s) 229, 279, 1297
MspR9I CCNGG 6 cut(s) 89, 528, 611, 645, 1001, 1298
MvaI CCWGG 5 cut(s) 89, 528, 611, 645, 1001
MwoI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
NciI CCSGG 1 cut(s) 1298
NdeII GATC 4 cut(s) 320, 353, 637, 1258
NlaIII CATG 4 cut(s) 419, 506, 781, 1148
NlaIV GGNNCC 4 cut(s) 97, 510, 718, 998
NmuCI GTSAC 4 cut(s) 432, 872, 919, 1236
NspI RCATGY 2 cut(s) 506, 1148
NspV TTCGAA 1 cut(s) 1030
PaeR7I CTCGAG 1 cut(s) 1280
PciI ACATGT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 1087
PfeI GAWTC 3 cut(s) 606, 826, 1316
Pfl23II CGTACG 1 cut(s) 1262
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 7 cut(s) 109, 540, 550, 770, 849, 893, 1243
PpsI GAGTC 7 cut(s) 109, 540, 550, 770, 849, 893, 1243
Ppu21I YACGTR 2 cut(s) 22, 1266
PscI ACATGT 1 cut(s) 502
Psp6I CCWGG 5 cut(s) 87, 526, 609, 643, 999
PspGI CCWGG 5 cut(s) 87, 526, 609, 643, 999
PspLI CGTACG 1 cut(s) 1262
PspN4I GGNNCC 4 cut(s) 97, 510, 718, 998
PspPI GGNCC 1 cut(s) 716
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 3 cut(s) 251, 568, 1264
RsaNI GTAC 3 cut(s) 250, 567, 1263
RseI CAYNNNNRTG 4 cut(s) 961, 972, 1149, 1250
SaqAI TTAA 2 cut(s) 1058, 1327
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 320, 353, 637, 1258
Sau96I GGNCC 1 cut(s) 716
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 7 cut(s) 110, 541, 550, 771, 850, 893, 1244
ScrFI CCNGG 6 cut(s) 89, 528, 611, 645, 1001, 1298
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 4 cut(s) 640, 752, 965, 976
Sfr274I CTCGAG 1 cut(s) 1280
SfuI TTCGAA 1 cut(s) 1030
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 1280
SmiMI CAYNNNNRTG 4 cut(s) 961, 972, 1149, 1250
SmlI CTYRAG 3 cut(s) 159, 558, 1280
SmoI CTYRAG 3 cut(s) 159, 558, 1280
SnaBI TACGTA 1 cut(s) 1266
Sse9I AATT 6 cut(s) 71, 116, 256, 274, 466, 785
SsiI CCGC 1 cut(s) 388
SspMI CTAG 4 cut(s) 216, 237, 593, 1313
StyD4I CCNGG 6 cut(s) 87, 526, 609, 643, 999, 1296
StyI CCWWGG 4 cut(s) 184, 194, 815, 1069
TaaI ACNGT 2 cut(s) 249, 919
TaiI ACGT 3 cut(s) 24, 346, 1268
TaqI TCGA 3 cut(s) 1030, 1188, 1281
TaqII GACCGA 1 cut(s) 1071
TasI AATT 6 cut(s) 71, 116, 256, 274, 466, 785
TatI WGTACW 2 cut(s) 249, 566
TfiI GAWTC 3 cut(s) 606, 826, 1316
Tru1I TTAA 2 cut(s) 1058, 1327
Tru9I TTAA 2 cut(s) 1058, 1327
TscAI CASTG 4 cut(s) 363, 727, 828, 924
TseFI GTSAC 4 cut(s) 432, 872, 919, 1236
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 4 cut(s) 432, 872, 919, 1236
TspDTI ATGAA 8 cut(s) 45, 51, 129, 276, 365, 440, 450, 1234
TspGWI ACGGA 2 cut(s) 797, 1079
TspRI CASTG 4 cut(s) 363, 727, 828, 924
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 3 cut(s) 71, 116, 785
XceI RCATGY 2 cut(s) 506, 1148
XhoI CTCGAG 1 cut(s) 1280
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 4 cut(s) 216, 237, 593, 1313
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.