Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0020583

Physical Location & Seq

Genomic Coordinates Forward (+)

8362866 .. 8365568

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTTGGTTTTGGCGCTGTCACCGGTGTGCCAGGAGAGGATAGTATGAAGAAAAACCCTGTGTACCATCTGATTCAGTGCTTGGAAAGCCTAAAGCAGTTGAGTTCTGGTGAAAGCAGTCAAAAAAGCGACAAGGATACTCAAGATCTTGTTTTGGGCTTGAAGAACATGGCTTCATATCTTCAGGATTTGCAAAGTAGAGAGGAATTTAGAGAAAGAGATGGACCAAAGGTTGTGGTGCGTATTCTAAATGATGGATTTGGGAACAGAGACATATTGTTCAGTGGCTTTGCTGTCGTTGCTGCTGCTTCAACGGGTAACAAGGATACAAAAAAGTCTTTCATGAACTTGAAAATTGAAGAGCTTATTTTGCAAGCACTTACAAAAAGTATAGACACAAGAGGTGAAAGCAGCATTGACTTGAATGTCAGTTTATATGATGCCATACATATTCTCTTAACACCTGACGATACTCGTTTTCCGCCTTCCCAAATATGTGGTAATGCGCTGAAATTCGCCCAAACTGGAATTGTAGAAGTTCTGCTTCAAGTTATGAAGACAACAGTCTTACCTAAGCGTTTCTTAGCAGCCATCGCTTTGGACGCTATTGCTGTCAATTTGGCAGGAATGGACACCGATGACATTATTTCTGAGGAGAGTTTGGGTACGCTAGTCTACCTCAGTGGGACTCCATGTTATTATGACTCTTCAGTCCTGCAAGAGATGATGTCTCTTATTTCAATACTCTCCCTAAAATCCCCTGCCTGTGCATTTGAAGCCGGGGTTGGAAAACTTACAATCAAGGTCATGAAGGATTTCCCTGCTGCAGAAATACTGCAATGGAGATGCTGTCTCATTATCCGGAATCTTGCTGTAAAAAACTCAGAAAACATAAAAATTATGCTCGAGAATGGTGTCGAAACATTGATAAGGCAGGCGAAGCAAACGCATGCATTCTGTAAGGATGCTGCGACAGACGCCCTAATGCGTCTGGAACTTGATGATTACTACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009987 GO:0030097 GO:0030154 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

338

Amino Acids

37.17

Weight (kDa)

5.11

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020583)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252951
rosa_rugosa	Rorug05G0541900 Rorug05G0542000 Rorug05G0542100
rosa_samantha	Rh6AG056100
rosa_wichuraiana	Rw6G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	425, 710
AccI	GTMKAC	1 cut(s)	675
AccIII	TCCGGA	1 cut(s)	861
AciI	CCGC	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	206, 512
AcuI	CTGAAG	2 cut(s)	167, 693
AcyI	GRCGYC	1 cut(s)	978
AfaI	GTAC	2 cut(s)	65, 667
AflIII	ACRYGT	1 cut(s)	1011
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	8 cut(s)	163, 312, 352, 359, 424, 548, 741, 776
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	768, 800
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	264, 735, 857
Ama87I	CYCGRG	1 cut(s)	905
Aor13HI	TCCGGA	1 cut(s)	861
ApeKI	GCWGC	6 cut(s)	302, 305, 411, 587, 824, 968
ApoI	RAATTY	2 cut(s)	206, 512
AsiGI	ACCGGT	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	17, 508
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	3 cut(s)	13, 122, 416
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	657, 690
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	6 cut(s)	289, 292, 423, 599, 811, 955
BccI	CCATC	4 cut(s)	75, 215, 248, 599
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	2 cut(s)	130, 319
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	3 cut(s)	264, 735, 857
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	2 cut(s)	130, 319
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	6 cut(s)	303, 306, 412, 588, 825, 969
BlsI	GCNGC	6 cut(s)	304, 307, 413, 589, 826, 970
Bme1390I	CCNGG	2 cut(s)	33, 781
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	33, 781
BmsI	GCATC	3 cut(s)	430, 836, 955
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	781
BsaAI	YACGTR	1 cut(s)	1012
BsaHI	GRCGYC	1 cut(s)	978
BsaJI	CCNNGG	1 cut(s)	780
BsaWI	WCCGGW	2 cut(s)	23, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	845
BseAI	TCCGGA	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	1 cut(s)	970
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	3 cut(s)	642, 694, 897
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	6 cut(s)	289, 292, 423, 599, 811, 955
BshTI	ACCGGT	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	3 cut(s)	24, 780, 862
BslFI	GGGAC	1 cut(s)	700
BsmAI	GTCTC	3 cut(s)	264, 735, 857
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	953
BsoBI	CYCGRG	1 cut(s)	905
Bsp13I	TCCGGA	1 cut(s)	861
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	3 cut(s)	643, 693, 896
BspEI	TCCGGA	1 cut(s)	861
BspHI	TCATGA	2 cut(s)	342, 807
BspMAI	CTGCAG	1 cut(s)	829
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	845
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	978
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	354, 712
BstACI	GRCGYC	1 cut(s)	978
BstBAI	YACGTR	1 cut(s)	1012
BstC8I	GCNNGC	3 cut(s)	375, 936, 951
BstDEI	CTNAG	5 cut(s)	573, 583, 651, 680, 883
BstF5I	GGATG	1 cut(s)	970
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 508
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	3 cut(s)	264, 735, 857
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 299, 370, 593, 602, 776, 940, 977
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	953
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	31, 779
BstSFI	CTRYAG	1 cut(s)	825
BstV1I	GCAGC	6 cut(s)	289, 292, 423, 599, 811, 955
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	2 cut(s)	497, 598
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	2 cut(s)	130, 319
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	970
BtsIMutI	CAGTG	3 cut(s)	83, 289, 688
Cac8I	GCNNGC	3 cut(s)	375, 936, 951
CciI	TCATGA	2 cut(s)	342, 807
CfoI	GCGC	2 cut(s)	17, 508
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	3 cut(s)	611, 977, 986
Csp6I	GTAC	2 cut(s)	64, 666
CspAI	ACCGGT	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	5 cut(s)	169, 343, 693, 808, 950
CviJI	RGCY	7 cut(s)	90, 159, 173, 288, 364, 590, 779
CviKI_1	RGCY	7 cut(s)	90, 159, 173, 288, 364, 590, 779
CviQI	GTAC	2 cut(s)	64, 666
DdeI	CTNAG	5 cut(s)	573, 583, 651, 680, 883
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	2 cut(s)	425, 710
DseDI	GACNNNNNNGTC	2 cut(s)	425, 710
Eam1104I	CTCTTC	2 cut(s)	354, 712
EarI	CTCTTC	2 cut(s)	354, 712
EciI	GGCGGA	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	167, 693
Eco88I	CYCGRG	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	955
FaeI	CATG	5 cut(s)	172, 346, 696, 811, 953
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 566, 598
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	5 cut(s)	168, 342, 692, 807, 949
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	303, 306, 412, 588, 825, 969
FokI	GGATG	1 cut(s)	977
Fsp4HI	GCNGC	6 cut(s)	303, 306, 412, 588, 825, 969
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	2 cut(s)	16, 507
GluI	GCNGC	6 cut(s)	303, 306, 412, 588, 825, 969
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	3 cut(s)	24, 780, 862
HgaI	GACGC	3 cut(s)	611, 977, 986
HhaI	GCGC	2 cut(s)	17, 508
Hin1I	GRCGYC	1 cut(s)	978
Hin1II	CATG	5 cut(s)	172, 346, 696, 811, 953
Hin6I	GCGC	2 cut(s)	15, 506
HinP1I	GCGC	2 cut(s)	15, 506
HinfI	GANTC	4 cut(s)	73, 688, 704, 865
HpaII	CCGG	3 cut(s)	24, 780, 862
HphI	GGTGA	3 cut(s)	13, 122, 416
Hpy166II	GTNNAC	2 cut(s)	64, 676
Hpy188I	TCNGA	3 cut(s)	72, 652, 886
Hpy188III	TCNNGA	7 cut(s)	143, 185, 343, 808, 862, 907, 992
Hpy8I	GTNNAC	2 cut(s)	64, 676
HpyAV	CCTTC	2 cut(s)	495, 805
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	1011
HpyCH4V	TGCA	7 cut(s)	193, 373, 718, 770, 827, 838, 953
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 299, 370, 593, 602, 776, 940, 977
HpyF3I	CTNAG	5 cut(s)	573, 583, 651, 680, 883
HpySE526I	ACGT	1 cut(s)	1011
Hsp92I	GRCGYC	1 cut(s)	978
Hsp92II	CATG	5 cut(s)	172, 346, 696, 811, 953
HspAI	GCGC	2 cut(s)	15, 506
Kpn2I	TCCGGA	1 cut(s)	861
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	6 cut(s)	289, 292, 423, 599, 811, 955
LweI	GCATC	3 cut(s)	430, 836, 955
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	1 cut(s)	1011
MaeIII	GTNAC	2 cut(s)	19, 317
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	6 cut(s)	61, 173, 175, 371, 568, 699
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	6 cut(s)	206, 354, 512, 528, 616, 897
MlyI	GAGTC	2 cut(s)	682, 698
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	5 cut(s)	31, 196, 395, 646, 689
Mph1103I	ATGCAT	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	815
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	3 cut(s)	24, 780, 862
MspR9I	CCNGG	2 cut(s)	33, 781
Mva1269I	GAATGC	1 cut(s)	953
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	8 cut(s)	87, 299, 370, 593, 602, 776, 940, 977
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	5 cut(s)	172, 346, 696, 811, 953
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	953
OliI	CACNNNNGTG	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	953
PaeR7I	CTCGAG	1 cut(s)	905
PagI	TCATGA	2 cut(s)	342, 807
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	953
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	73, 865
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	304, 307, 413, 589, 826, 970
PleI	GAGTC	2 cut(s)	682, 698
PpsI	GAGTC	2 cut(s)	682, 698
Ppu21I	YACGTR	1 cut(s)	1012
PshAI	GACNNNNGTC	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	65, 667
RsaNI	GTAC	2 cut(s)	64, 666
RseI	CAYNNNNRTG	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	6 cut(s)	303, 306, 412, 588, 825, 969
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	682, 698
ScrFI	CCNGG	2 cut(s)	33, 781
SetI	ASST	8 cut(s)	234, 366, 406, 466, 574, 681, 807, 1014
SfaNI	GCATC	3 cut(s)	430, 836, 955
SfcI	CTRYAG	1 cut(s)	825
Sfr274I	CTCGAG	1 cut(s)	905
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	141, 905
SmoI	CTYRAG	2 cut(s)	141, 905
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	6 cut(s)	206, 354, 512, 528, 616, 897
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	31, 779
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	1014
TaqI	TCGA	2 cut(s)	906, 918
TasI	AATT	6 cut(s)	206, 354, 512, 528, 616, 897
TfiI	GAWTC	2 cut(s)	73, 865
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	3 cut(s)	83, 289, 688
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	6 cut(s)	302, 305, 411, 587, 824, 968
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	6 cut(s)	62, 165, 331, 359, 569, 824
TspRI	CASTG	3 cut(s)	83, 289, 688
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	206, 512
XceI	RCATGY	1 cut(s)	953
XhoI	CTCGAG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	1 cut(s)	671
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.