RchiOBHm_Chr6g0265371

WD domain, G-beta repeat

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
20959609 .. 20962270
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 144 bp
ATGTGGTCCTTGGCTACTAACCAAATAATGATTGTTGCTCTGCATGATGCCCCCATTAGAGACATGGCTGGGATGCCCGAGTTGAACCTCTTAGTCACTAGGAGCTTGGACAAGACTGTAAAGGGCTTTCACAACATTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

47

Amino Acids

5.28

Weight (kDa)

6.7

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15850
rosa_chinensis RchiOBHm_Chr6g0265371
rosa_multiflora Rmu_co8307623.1_g000001
rosa_samantha Rh3BG217900
rosa_wichuraiana Rw6G027590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 37, 63
BsaJI CCNNGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 2 cut(s) 44, 64
CviJI RGCY 4 cut(s) 14, 68, 105, 126
CviKI_1 RGCY 4 cut(s) 14, 68, 105, 126
DdeI CTNAG 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 47, 67
FaiI YATR 2 cut(s) 45, 65
FatI CATG 2 cut(s) 43, 63
FokI GGATG 1 cut(s) 85
FspBI CTAG 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 47, 67
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 2 cut(s) 47, 67
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 54
LweI GCATC 2 cut(s) 37, 63
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 98
NlaIII CATG 2 cut(s) 47, 67
NmuCI GTSAC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 68
PspPI GGNCC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 6
SetI ASST 2 cut(s) 90, 107
SfaNI GCATC 2 cut(s) 37, 63
SgeI CNNG 9 cut(s) 22, 56, 76, 81, 89, 91, 111, 118, 124
SinI GGWCC 1 cut(s) 6
SspMI CTAG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 118
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.