RchiOBHm_Chr6g0268051

Ribosomal_L32e

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
24911971 .. 24917855
5885 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGCGGTTCCATTGTTGAAGAAGGCGATCGTGAAGAAGAGGGTCAAGCAGTTCAAGAGGCCCAAAAGCGACTGCAAGATCTGCGTCAGGTTTTGCAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAGATCTGGTTTCTTTCACAGAAGGGCAATTGATTCCCTTTCTTCAAAACAACTGAAATCTAGGGAAATGCTTGAATATTTTTACATAACTGTTTATTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

9.33

Weight (kDa)

10.39

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019846)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374061 RchiOBHm_Chr6g0268051
rosa_rugosa Rorug03G0286700
rosa_samantha Rh3BG337400 Rh3CG334800 Rh5CG304400
rosa_wichuraiana Rw4G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 5 cut(s) 19, 55, 112, 177, 206
AoxI GGCC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 60
BfaI CTAG 1 cut(s) 192
BglII AGATCT 2 cut(s) 78, 134
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 30
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 27, 78, 134
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 9
BssMI GATC 3 cut(s) 27, 78, 134
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 104
BstKTI GATC 3 cut(s) 30, 81, 137
BstMBI GATC 3 cut(s) 27, 78, 134
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 78, 134
BstYI RGATCY 2 cut(s) 78, 134
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 60
CseI GACGC 1 cut(s) 73
CviJI RGCY 2 cut(s) 61, 128
CviKI_1 RGCY 2 cut(s) 61, 128
DdeI CTNAG 1 cut(s) 104
DpnI GATC 3 cut(s) 29, 80, 136
DpnII GATC 3 cut(s) 27, 78, 134
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaiI YATR 1 cut(s) 218
FspBI CTAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 61
HgaI GACGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 31, 55
HpyAV CCTTC 2 cut(s) 16, 147
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 75, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 104
Kzo9I GATC 3 cut(s) 27, 78, 134
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 73, 123
MaeI CTAG 1 cut(s) 192
MalI GATC 3 cut(s) 29, 80, 136
MboI GATC 3 cut(s) 27, 78, 134
MboII GAAGA 4 cut(s) 31, 46, 49, 165
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 2 cut(s) 78, 134
MluCI AATT 2 cut(s) 112, 159
MnlI CCTC 2 cut(s) 33, 51
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 3 cut(s) 27, 78, 134
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 164
Ple19I CGATCG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 60
PsuI RGATCY 2 cut(s) 78, 134
PvuI CGATCG 1 cut(s) 30
Sau3AI GATC 3 cut(s) 27, 78, 134
Sau96I GGNCC 1 cut(s) 60
SetI ASST 2 cut(s) 92, 110
SgeI CNNG 9 cut(s) 43, 58, 67, 88, 100, 141, 150, 204, 215
Sse9I AATT 2 cut(s) 112, 159
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 223
TasI AATT 2 cut(s) 112, 159
TfiI GAWTC 1 cut(s) 164
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.