Rh3BG337400

Mitochondrial ribosomal subunit S27

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019846
Physical Location & Seq
Reverse (-)
36066779 .. 36083731
16953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG337400.1

Sequence Viewer

Length: 648 bp
ATGTGGTTGGTGGATTTGGAAGCGCAAATTGGGACCAGTTTGGAGCAGTTGCATGAGTTTGTTGCAATTGATAGAGCAACAAGTGTTGTTCGCAATTGGGGTGGTGCATTTCAGTGTGGTGGTGTAAAGAGTTGGAGGCTGCAAACCTTTGGTGTGGTGTCCCGACCAAGTGATAAGGGGTCCGTAATGGTAGATGGTGGTTGCCAGGCTATTGAGTATGTGATTAGTGCTGTTTTTGCAGCATTCCATATTGACTTCACCTATTACTTGGTGAGAGTCACTCTTGAAGAAACTAAACCTGAAACCAAAGGCTTTGGAGATCCTATTTTGAAGTTTTGCAGTTTTCGAAGGTTGAATTGTTCCCAAAAGGCTTGCAAATTTGGTTTCTTTGACAGAAGAGAGGCAAAGGCAAGGATATTCGGGCATGTGCTTAACCCGACAGGCTTGAAGTCTGCGCATAAGATTTTGCGCAAGAAACTGATTGGGGAGAAAGTTGCCCAGTGGTACCCACATGACATTAGGAAAGATGACCCCCTTATCATGGAAGCTGAGGAAAAAGAGCGCACAAACAAGCTTGAAATGTTGAAGCGTCGAGGAAAAGGACCACCCAAGAAGGGTCAAGGAAAGCGTTCCAAGCGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S33

Protein Analysis

215

Amino Acids

24.45

Weight (kDa)

9.81

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S33 PF08293 134 - 205 1.2e-13 Mitochondrial ribosomal subunit S27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019846)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374061 RchiOBHm_Chr6g0268051
rosa_rugosa Rorug03G0286700
rosa_samantha Rh3BG337400 Rh3CG334800 Rh5CG304400
rosa_wichuraiana Rw4G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 456, 470
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 377
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 541, 614
AgsI TTSAA 6 cut(s) 287, 331, 355, 448, 578, 586
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 3 cut(s) 548, 574, 645
AluI AGCT 3 cut(s) 548, 574, 645
AlwI GGATC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 139, 239
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 628
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 5 cut(s) 25, 457, 471, 564, 639
AspS9I GGNCC 3 cut(s) 33, 180, 602
AsuHPI GGTGA 2 cut(s) 250, 283
AsuII TTCGAA 1 cut(s) 346
AvaII GGWCC 3 cut(s) 33, 180, 602
BanI GGYRCC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 126, 251
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 206
BfaI CTAG 1 cut(s) 646
BisI GCNGC 2 cut(s) 140, 240
BlsI GCNGC 2 cut(s) 141, 241
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 3 cut(s) 33, 180, 602
BmgT120I GGNCC 3 cut(s) 33, 180, 602
BmiI GGNNCC 3 cut(s) 34, 181, 506
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 493
BplI GAGNNNNNCTC 2 cut(s) 265, 297
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 346
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 614
Bse1I ACTGG 2 cut(s) 36, 499
BseBI CCWGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 541, 614
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 36, 499
BseXI GCAGC 2 cut(s) 126, 251
BshNI GGYRCC 1 cut(s) 504
BslFI GGGAC 2 cut(s) 46, 145
BslI CCNNNNNNNGG 2 cut(s) 541, 614
BsmFI GGGAC 2 cut(s) 46, 145
BsmI GAATGC 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 34, 181, 506
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 504
BsrI ACTGG 2 cut(s) 36, 499
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 549
BstHHI GCGC 5 cut(s) 25, 457, 471, 564, 639
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 236, 634
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 126, 251
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 119, 506
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 5 cut(s) 25, 457, 471, 564, 639
Cfr13I GGNCC 3 cut(s) 33, 180, 602
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 4 cut(s) 53, 425, 512, 541
CviJI RGCY 8 cut(s) 139, 209, 312, 371, 444, 548, 574, 645
CviKI_1 RGCY 8 cut(s) 139, 209, 312, 371, 444, 548, 574, 645
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 1 cut(s) 549
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 33, 180, 602
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 56, 428, 515, 544
FaiI YATR 7 cut(s) 54, 219, 249, 426, 459, 513, 542
FaqI GGGAC 2 cut(s) 46, 145
FatI CATG 4 cut(s) 52, 424, 511, 540
Fnu4HI GCNGC 2 cut(s) 140, 240
Fsp4HI GCNGC 2 cut(s) 140, 240
FspBI CTAG 1 cut(s) 646
FspI TGCGCA 2 cut(s) 456, 470
GlaI GCGC 5 cut(s) 24, 456, 470, 563, 638
GluI GCNGC 2 cut(s) 140, 240
HgaI GACGC 1 cut(s) 578
HhaI GCGC 5 cut(s) 25, 457, 471, 564, 639
Hin1II CATG 4 cut(s) 56, 428, 515, 544
Hin6I GCGC 5 cut(s) 23, 455, 469, 562, 637
HinP1I GCGC 5 cut(s) 23, 455, 469, 562, 637
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 1 cut(s) 276
HphI GGTGA 2 cut(s) 250, 283
Hpy188III TCNNGA 2 cut(s) 162, 284
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 2 cut(s) 342, 607
HpyCH4V TGCA 7 cut(s) 52, 65, 107, 142, 239, 339, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 634
HpyF3I CTNAG 1 cut(s) 549
Hsp92II CATG 4 cut(s) 56, 428, 515, 544
HspAI GCGC 5 cut(s) 23, 455, 469, 562, 637
KpnI GGTACC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 6 cut(s) 49, 191, 218, 312, 426, 512
Lsp1109I GCAGC 2 cut(s) 126, 251
MaeI CTAG 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 299, 408
MfeI CAATTG 2 cut(s) 66, 94
MflI RGATCY 1 cut(s) 319
MluCI AATT 5 cut(s) 27, 66, 94, 355, 377
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 4 cut(s) 129, 394, 544, 587
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 2 cut(s) 66, 94
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 236, 634
NdeII GATC 1 cut(s) 319
NlaIII CATG 4 cut(s) 56, 428, 515, 544
NlaIV GGNNCC 3 cut(s) 34, 181, 506
NmuCI GTSAC 1 cut(s) 277
NsbI TGCGCA 2 cut(s) 456, 470
NspI RCATGY 1 cut(s) 428
NspV TTCGAA 1 cut(s) 346
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 628
PkrI GCNGC 2 cut(s) 141, 241
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 34, 181, 506
PspPI GGNCC 3 cut(s) 33, 180, 602
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 140, 240
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 3 cut(s) 33, 180, 602
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 206
SetI ASST 7 cut(s) 149, 263, 301, 353, 550, 576, 647
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 3 cut(s) 33, 180, 602
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 5 cut(s) 27, 66, 94, 355, 377
SspMI CTAG 1 cut(s) 646
StyD4I CCNGG 1 cut(s) 204
TaqI TCGA 2 cut(s) 346, 592
TasI AATT 5 cut(s) 27, 66, 94, 355, 377
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 119, 506
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 139, 239
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 119, 506
VpaK11BI GGWCC 3 cut(s) 33, 180, 602
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.