Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019846

Physical Location & Seq

Genomic Coordinates Reverse (-)

37279838 .. 37285815

Gene Structure 5978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG334800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGGTTGGTGGATTTGCAAGTGCAAATTGCGACCAGTTTGGAGCAGTTGCATGAGTTTGTTGCAATTGATGGAGCAACAAGTGTTGTTCGCAATTGGGGTGGTGCATTTCAGTGTGGTGGTGTAAAGAGTTGGAGGCTGCAAACCTTTGGTGTGATGTCCCGACTAAGTGATAAGGGGTCCGTAATGGTAGATGGTGGTTGCCAGGCTATTAAGGAGCTAGAGGGAAGACGACGACCGTTGAGGAAAGCAGGGGGAGAGGTGCAGCTAGCTCAGGTGTATGTGTTTTTGCAGCATTCCATATTGACTTCACCTGTTTACTTGGTGAGAGTCACGCTTGAAGAGACTAAACCTGAAACCAAAGGCTTTGGATATCCAATTTTGAAGTTTTCTAAGGTTGAATTGTTACCAAAAGGCTCGCAAATTTGGTTTCTTTCACAGAAGAGAGGCAAAGTGAGATGGCGCTTGAAGTCTGCGCATAAGATTTTGCGCAAGAAGCTGATTGGGGAGAAAGTTGCCCAGTGGTACCCACATGACATTAGGAAAGATGACCCCCTTATCATGGAAGCTGAGGAAAAAGAGCGCACAAACAAGCTTGAAATGTTGAAGCGTCGAGGAAAAGGACCACCCAAGAAGGGTCAAGGAAAGCGTTCCAAGCGCAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S33

Protein Analysis

222

Amino Acids

25.34

Weight (kDa)

10.23

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019846)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0374061 RchiOBHm_Chr6g0268051
rosa_rugosa	Rorug03G0286700
rosa_samantha	Rh3BG337400 Rh3CG334800 Rh5CG304400
rosa_wichuraiana	Rw4G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	477, 491
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	423
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	562, 635
AgsI	TTSAA	6 cut(s)	341, 385, 401, 469, 599, 607
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	7 cut(s)	220, 268, 272, 499, 569, 595, 666
AluI	AGCT	7 cut(s)	220, 268, 272, 499, 569, 595, 666
Alw26I	GTCTC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	139, 265, 292
ApoI	RAATTY	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	649
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	5 cut(s)	465, 478, 492, 585, 660
AspS9I	GGNCC	2 cut(s)	180, 623
AsuHPI	GGTGA	2 cut(s)	303, 337
AsuNHI	GCTAGC	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	180, 623
BanI	GGYRCC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	126, 277, 304
BccI	CCATC	3 cut(s)	65, 188, 453
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	3 cut(s)	221, 269, 667
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	3 cut(s)	140, 266, 293
BlsI	GCNGC	3 cut(s)	141, 267, 294
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	2 cut(s)	180, 623
BmgT120I	GGNCC	2 cut(s)	180, 623
BmiI	GGNNCC	2 cut(s)	181, 527
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	514
BmtI	GCTAGC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	235
Bpu10I	CCTNAGC	2 cut(s)	273, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 635
Bse1I	ACTGG	2 cut(s)	36, 520
BseBI	CCWGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	562, 635
BseMII	CTCAG	2 cut(s)	287, 561
BseNI	ACTGG	2 cut(s)	36, 520
BseXI	GCAGC	3 cut(s)	126, 277, 304
BsgI	GTGCAG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	562, 635
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	286, 562
BspLI	GGNNCC	2 cut(s)	181, 527
BspOI	GCTAGC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	525
BsrI	ACTGG	2 cut(s)	36, 520
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	336, 437
BstC8I	GCNNGC	2 cut(s)	270, 419
BstDEI	CTNAG	4 cut(s)	167, 273, 393, 570
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	5 cut(s)	465, 478, 492, 585, 660
BstMAI	GTCTC	1 cut(s)	338
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	496, 655
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	126, 277, 304
BstV2I	GAAGAC	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	119, 527
Cac8I	GCNNGC	2 cut(s)	270, 419
CfoI	GCGC	5 cut(s)	465, 478, 492, 585, 660
Cfr13I	GGNCC	2 cut(s)	180, 623
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	526
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	53, 533, 562
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	4 cut(s)	167, 273, 393, 570
Eam1104I	CTCTTC	2 cut(s)	336, 437
EarI	CTCTTC	2 cut(s)	336, 437
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	180, 623
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	374
FaeI	CATG	3 cut(s)	56, 536, 565
FaiI	YATR	6 cut(s)	54, 282, 302, 480, 534, 563
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	52, 532, 561
Fnu4HI	GCNGC	3 cut(s)	140, 266, 293
Fsp4HI	GCNGC	3 cut(s)	140, 266, 293
FspBI	CTAG	3 cut(s)	221, 269, 667
FspI	TGCGCA	2 cut(s)	477, 491
GlaI	GCGC	5 cut(s)	464, 477, 491, 584, 659
GluI	GCNGC	3 cut(s)	140, 266, 293
HaeII	RGCGCY	1 cut(s)	466
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	5 cut(s)	465, 478, 492, 585, 660
Hin1II	CATG	3 cut(s)	56, 536, 565
Hin6I	GCGC	5 cut(s)	463, 476, 490, 583, 658
HinP1I	GCGC	5 cut(s)	463, 476, 490, 583, 658
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	2 cut(s)	303, 337
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	237, 615
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	19, 25, 52, 65, 107, 142, 265, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	496, 655
HpyF3I	CTNAG	4 cut(s)	167, 273, 393, 570
Hsp92II	CATG	3 cut(s)	56, 536, 565
HspAI	GCGC	5 cut(s)	463, 476, 490, 583, 658
KpnI	GGTACC	1 cut(s)	529
LmnI	GCTCC	3 cut(s)	43, 74, 217
LpnPI	CCDG	8 cut(s)	49, 191, 218, 237, 260, 327, 366, 533
Lsp1109I	GCAGC	3 cut(s)	126, 277, 304
MaeI	CTAG	3 cut(s)	221, 269, 667
MaeIII	GTNAC	2 cut(s)	331, 405
MboII	GAAGA	3 cut(s)	240, 353, 454
MfeI	CAATTG	2 cut(s)	66, 94
MluCI	AATT	6 cut(s)	27, 66, 94, 378, 401, 423
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	129, 217, 237, 253, 440, 565, 608
MroXI	GAANNNNTTC	1 cut(s)	649
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	2 cut(s)	66, 94
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	496, 655
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	56, 536, 565
NlaIV	GGNNCC	2 cut(s)	181, 527
NmuCI	GTSAC	1 cut(s)	331
NsbI	TGCGCA	2 cut(s)	477, 491
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	141, 267, 294
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	181, 527
PspPI	GGNCC	2 cut(s)	180, 623
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	140, 266, 293
Sau96I	GGNCC	2 cut(s)	180, 623
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	180, 623
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	6 cut(s)	27, 66, 94, 378, 401, 423
SspMI	CTAG	3 cut(s)	221, 269, 667
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	613
TasI	AATT	6 cut(s)	27, 66, 94, 378, 401, 423
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	119, 527
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	139, 265, 292
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	119, 527
VpaK11BI	GGWCC	2 cut(s)	180, 623
XapI	RAATTY	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	3 cut(s)	221, 269, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.