Rw4G014430

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
33391829 .. 33394466
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014430.1

Sequence Viewer

Length: 282 bp
ATGCTTGATTGCCCGGTGTGGAGGGGGAGAGAGAGGTGCGCCAATCAGGTTTTCCAGAAGCAAAAGGGGTTTCTGGGTCTTTTGCTTTTCCCACTTCTACCAGAAGCATATTTCACTTGTTGCTGCAATTGTTGCTGCTGTAAGTACACTGTCTATACAATCCGCACTGATATATCAAGCCTTCTTTTCTCTATGTTGGTTTTACAAGTGAGGCTCACTGTTGAAGAGACTAAATCTGAAACCAGAGGCTTTGGAGATCCAATTTTGAAGGTCTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.8

Weight (kDa)

8.4

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019846)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374061 RchiOBHm_Chr6g0268051
rosa_rugosa Rorug03G0286700
rosa_samantha Rh3BG337400 Rh3CG334800 Rh5CG304400
rosa_wichuraiana Rw4G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 163
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 224, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 123, 135
AspLEI GCGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 110, 122
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 2 cut(s) 124, 136
BlsI GCNGC 2 cut(s) 125, 137
Bme1390I CCNGG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 110, 122
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 163
BspPI GGATC 1 cut(s) 251
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 151, 220
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 132
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 110, 122
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 147, 165, 216
CfoI GCGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 3 cut(s) 180, 214, 249
CviKI_1 RGCY 3 cut(s) 180, 214, 249
CviQI GTAC 1 cut(s) 145
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
FaiI YATR 4 cut(s) 109, 156, 173, 194
Fnu4HI GCNGC 2 cut(s) 124, 136
Fsp4HI GCNGC 2 cut(s) 124, 136
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 124, 136
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 191, 262
HpyCH4III ACNGT 2 cut(s) 151, 220
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 27, 32, 59, 68, 114, 256, 259
Lsp1109I GCAGC 2 cut(s) 110, 122
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 127
MflI RGATCY 1 cut(s) 256
MluCI AATT 2 cut(s) 127, 261
MnlI CCTC 4 cut(s) 15, 27, 204, 239
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 125, 137
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 2 cut(s) 124, 136
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 38, 51, 273
Sse9I AATT 2 cut(s) 127, 261
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 151, 220
TasI AATT 2 cut(s) 127, 261
TatI WGTACW 1 cut(s) 144
TscAI CASTG 3 cut(s) 154, 172, 223
TseI GCWGC 2 cut(s) 123, 135
TspRI CASTG 3 cut(s) 154, 172, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.