RchiOBHm_Chr1g0374061

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
62005176 .. 62008775
3600 bp
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UTR
Exon/CDS
Intron
PRQ59789

Sequence Viewer

Length: 417 bp
ATGCAGAAAAGATGGAGAGAAAAAGAAAGGACGCTTCTGGATTGTGCCGTTGCGAGTGGTAGAGAGACGGAGAGAGTGAGGGTGTTGCTTCTTCTGGATTCTGCCCAGGTCATCAAGGACAAGAAAGGTATTGCTTCTTTTTCTCATCTGGGTATTGCTTGCTTTTCTGGGTTCGTGGTTATTTGTGGTTGCATGTTCGTTTTGCAGGTGAGACTTACCCTTGAGGAGCCTGAACCTGAAACCAAAGGCTTTGGAAATTCAATTTTGAAGGTCCTACAGTTCTGCAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCTTTTCACACAAGGTCAGTTCAATCCATTACACAAAACCCAGAAGCGAAAAGTATGATATTCTGTTGCCTGATTCCAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.75

Weight (kDa)

9.36

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019846)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374061 RchiOBHm_Chr6g0268051
rosa_rugosa Rorug03G0286700
rosa_samantha Rh3BG337400 Rh3CG334800 Rh5CG304400
rosa_wichuraiana Rw4G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AcsI RAATTY 2 cut(s) 256, 410
AgsI TTSAA 4 cut(s) 261, 268, 301, 354
AjnI CCWGG 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 59, 205
ApoI RAATTY 2 cut(s) 256, 410
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 271
BccI CCATC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 59, 205
BfmI CTRYAG 2 cut(s) 275, 283
BfuAI ACCTGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 326
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 59, 205
BsmBI CGTCTC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 287
BspMI ACCTGC 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 293
BstMAI GTCTC 2 cut(s) 59, 205
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 275, 283
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 40
CviAII CATG 1 cut(s) 193
CviJI RGCY 3 cut(s) 229, 249, 317
CviKI_1 RGCY 3 cut(s) 229, 249, 317
DdeI CTNAG 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 194, 387
FatI CATG 1 cut(s) 192
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 98, 404
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 38, 95
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 4, 192, 205, 285
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 1 cut(s) 196
LmnI GCTCC 2 cut(s) 226, 311
MboII GAAGA 1 cut(s) 83
MluCI AATT 4 cut(s) 256, 261, 301, 410
MnlI CCTC 2 cut(s) 72, 217
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 228
NspI RCATGY 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 98, 404
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 107
SetI ASST 7 cut(s) 111, 130, 210, 238, 273, 299, 348
SfcI CTRYAG 2 cut(s) 275, 283
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 256, 261, 301, 410
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 279
TasI AATT 4 cut(s) 256, 261, 301, 410
TfiI GAWTC 2 cut(s) 98, 404
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 256, 410
XceI RCATGY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.