RchiOBHm_Chr6g0268161

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020590
Physical Location & Seq
Reverse (-)
24995035 .. 24995782
748 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGCGGTGCCACTCACTAGGCTGCCAGTAAGAGGAGGTTTGGTTTCTTGCCACCATTCTCTGGGCCGCCACTTCGTCGTCACTGCCAACCCGGCCGTGGTCCAGCATATCCTCAAGACAAAGTTCCACATCTACCAAAAGGGCGAATCCTTCCGTACAACTCTCCAAGACCTCCTCGGTGACGGCATTTTCAACGCCGAAGGTGACAACTGGAAATTCCAGCGGCAGCTTTCCAGCCGCGAATTCAACACAAAGTCGCTCAGGAAATTCGTGGAAGAGGTGGTGGACATTGAGCTATACAATCAGATGATCCCCATTCTATCCAAATCTTCCAGCGATCGAACCGTTCTCGATTTCCAAGACATTCTCCTGCGGTTCGCCTTCGACAACATTTGCCAGGTAGGGTTCGGGTATGACTCGGAGTATCTCCTTCCTTCTCTGCCTCAAGCTAAATTCGCGATGGCGTTCGACGATGAGGTCCAGATCAGCGGCGACAGGTTCAGTTCCATGCGCTCGATGTGGAAGATCAAGCGATCTTTCAGAATCGGGTCGGAAAGCCATCTCCGCCGTGTGGTCTCCAACGTCCGAGAGTTTGAGAACACCATCGTCAGGCAAAAGAAGCGCGAACTGGACGAGAAGAAGACTCTAGATCTCACGATCTGCTGTCTCGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

225

Amino Acids

25.94

Weight (kDa)

9.06

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 19 - 223 5e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020590)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0268161
rosa_rugosa Rorug06G0039300
rosa_samantha Rh6AG159200 Rh6AG312100 Rh6BG319000 Rh6CG154800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 61
AccII CGCG 3 cut(s) 240, 458, 624
AciI CCGC 7 cut(s) 5, 67, 223, 238, 373, 489, 565
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 4 cut(s) 215, 242, 266, 452
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 5 cut(s) 32, 61, 97, 571, 609
AgsI TTSAA 2 cut(s) 193, 247
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 3 cut(s) 229, 295, 449
AluI AGCT 3 cut(s) 229, 295, 449
Alw26I GTCTC 2 cut(s) 580, 671
AlwI GGATC 1 cut(s) 304
AoxI GGCC 2 cut(s) 64, 93
ApeKI GCWGC 2 cut(s) 22, 226
ApoI RAATTY 4 cut(s) 215, 242, 266, 452
AspLEI GCGC 2 cut(s) 513, 624
AspS9I GGNCC 3 cut(s) 64, 100, 478
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 191, 215
AvaII GGWCC 2 cut(s) 100, 478
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 647
BbvI GCAGC 2 cut(s) 9, 238
BccI CCATC 3 cut(s) 454, 567, 611
BceAI ACGGC 3 cut(s) 80, 199, 552
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 580, 671
BfaI CTAG 2 cut(s) 18, 647
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 649
BisI GCNGC 6 cut(s) 23, 67, 224, 227, 238, 490
BlsI GCNGC 6 cut(s) 24, 68, 225, 228, 239, 491
Bme1390I CCNGG 2 cut(s) 92, 398
Bme18I GGWCC 2 cut(s) 100, 478
BmgT120I GGNCC 3 cut(s) 64, 100, 478
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 92, 398
BpiI GAAGAC 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 98, 429
BpuMI CCSGG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 2 cut(s) 96, 175
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 3 cut(s) 26, 215, 633
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 96, 175
BseLI CCNNNNNNNGG 5 cut(s) 32, 61, 97, 571, 609
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 26, 215, 633
BseRI GAGGAG 2 cut(s) 48, 164
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 9, 238
Bsh1236I CGCG 3 cut(s) 240, 458, 624
Bsh1285I CGRYCG 2 cut(s) 96, 340
BshFI GGCC 2 cut(s) 66, 95
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 2 cut(s) 96, 340
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 5 cut(s) 32, 61, 97, 571, 609
BsmAI GTCTC 2 cut(s) 580, 671
BsnI GGCC 2 cut(s) 66, 95
Bso31I GGTCTC 1 cut(s) 580
Bsp143I GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
Bsp68I TCGCGA 1 cut(s) 458
BspACI CCGC 7 cut(s) 5, 67, 223, 238, 373, 489, 565
BspANI GGCC 2 cut(s) 66, 95
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 3 cut(s) 240, 458, 624
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 580
BsrI ACTGG 3 cut(s) 26, 215, 633
BssECI CCNNGG 2 cut(s) 96, 175
BssMI GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 96
BstFNI CGCG 3 cut(s) 240, 458, 624
BstHHI GCGC 2 cut(s) 513, 624
BstKTI GATC 7 cut(s) 312, 340, 486, 528, 536, 652, 660
BstMAI GTCTC 2 cut(s) 580, 671
BstMBI GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
BstMCI CGRYCG 2 cut(s) 96, 340
BstMWI GCNNNNNNNGC 4 cut(s) 92, 455, 564, 619
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 2 cut(s) 90, 396
BstUI CGCG 3 cut(s) 240, 458, 624
BstV1I GCAGC 2 cut(s) 9, 238
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZI CGGCCG 1 cut(s) 93
BsuRI GGCC 2 cut(s) 66, 95
BtgI CCRYGG 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 473
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BtuMI TCGCGA 1 cut(s) 458
CfoI GCGC 2 cut(s) 513, 624
Cfr13I GGNCC 3 cut(s) 64, 100, 478
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 508
CviJI RGCY 8 cut(s) 22, 66, 95, 229, 237, 295, 449, 558
CviKI_1 RGCY 8 cut(s) 22, 66, 95, 229, 237, 295, 449, 558
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 260
DpnI GATC 7 cut(s) 311, 339, 485, 527, 535, 651, 659
DpnII GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 554
EclXI CGGCCG 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 100, 478
Eco52I CGGCCG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 511
FaiI YATR 4 cut(s) 108, 298, 414, 509
FatI CATG 1 cut(s) 507
Fnu4HI GCNGC 6 cut(s) 23, 67, 224, 227, 238, 490
Fsp4HI GCNGC 6 cut(s) 23, 67, 224, 227, 238, 490
FspBI CTAG 2 cut(s) 18, 647
GlaI GCGC 2 cut(s) 512, 623
GluI GCNGC 6 cut(s) 23, 67, 224, 227, 238, 490
HaeIII GGCC 2 cut(s) 66, 95
HapII CCGG 1 cut(s) 92
HhaI GCGC 2 cut(s) 513, 624
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 2 cut(s) 511, 622
HinP1I GCGC 2 cut(s) 511, 622
HinfI GANTC 4 cut(s) 146, 416, 543, 643
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 191, 215
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 306, 421, 542, 553, 587
Hpy188III TCNNGA 8 cut(s) 115, 262, 350, 457, 481, 647, 655, 675
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 80, 473
HpyAV CCTTC 5 cut(s) 160, 194, 391, 440, 444
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 455, 564, 619
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 2 cut(s) 511, 622
Kzo9I GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
Lsp1109I GCAGC 2 cut(s) 9, 238
MaeI CTAG 2 cut(s) 18, 647
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 3 cut(s) 79, 179, 203
MalI GATC 7 cut(s) 311, 339, 485, 527, 535, 651, 659
MboI GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
MboII GAAGA 5 cut(s) 287, 321, 535, 649, 652
MflI RGATCY 1 cut(s) 649
MluCI AATT 4 cut(s) 215, 242, 266, 452
MlyI GAGTC 2 cut(s) 410, 637
MmeI TCCRAC 2 cut(s) 531, 603
MnlI CCTC 8 cut(s) 26, 29, 122, 182, 185, 271, 453, 469
MspA1I CMGCKG 2 cut(s) 223, 489
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 92, 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 3 cut(s) 240, 458, 624
MwoI GCNNNNNNNGC 4 cut(s) 92, 455, 564, 619
NciI CCSGG 1 cut(s) 92
NdeII GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 3 cut(s) 79, 179, 203
NruI TCGCGA 1 cut(s) 458
PfeI GAWTC 2 cut(s) 146, 543
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 6 cut(s) 24, 68, 225, 228, 239, 491
Ple19I CGATCG 1 cut(s) 340
PleI GAGTC 2 cut(s) 410, 637
PpsI GAGTC 2 cut(s) 410, 637
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 3 cut(s) 64, 100, 478
PsuI RGATCY 1 cut(s) 649
PvuI CGATCG 1 cut(s) 340
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SatI GCNGC 6 cut(s) 23, 67, 224, 227, 238, 490
Sau3AI GATC 7 cut(s) 309, 337, 483, 525, 533, 649, 657
Sau96I GGNCC 3 cut(s) 64, 100, 478
SchI GAGTC 2 cut(s) 410, 637
ScrFI CCNGG 2 cut(s) 92, 398
SinI GGWCC 2 cut(s) 100, 478
SmlI CTYRAG 2 cut(s) 113, 444
SmoI CTYRAG 2 cut(s) 113, 444
Sse9I AATT 4 cut(s) 215, 242, 266, 452
SsiI CCGC 7 cut(s) 5, 67, 223, 238, 373, 489, 565
SspMI CTAG 2 cut(s) 18, 647
StyD4I CCNGG 2 cut(s) 90, 396
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 585
TaqI TCGA 5 cut(s) 340, 351, 384, 468, 515
TasI AATT 4 cut(s) 215, 242, 266, 452
TauI GCSGC 4 cut(s) 69, 226, 240, 492
TfiI GAWTC 2 cut(s) 146, 543
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 3 cut(s) 79, 179, 203
TseI GCWGC 2 cut(s) 22, 226
Tsp45I GTSAC 3 cut(s) 79, 179, 203
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 100, 478
XapI RAATTY 4 cut(s) 215, 242, 266, 452
XbaI TCTAGA 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 2 cut(s) 18, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.