Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24914641 .. 24915012

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATCCCTATTCTATCCAAATCTTCCAGCGATCGAACCGTTCTCAATTTCCAAGACATTTTCCTACAGTTCGCCTTCGACAACATTTTCCAGGTAGGGTTCGGGTATGACTCAGAGTATCTCCTTCCTTCTTTGCCTCAAGCTAAATTCGCGATGGCCTTAGACTATGCTGTCCAGATCAGTTGCGACAGGTTCAGTTCTATGCGCTCGATGTGGAAGATCAAGCGGTCTTTCAGAATTGGGTCGGAAAGCCATCTCCCCGGTGTGGTCTCCAACGTCCGAGAGTTTGCGAACACCATCGTCAGGCAAAAGAAACGCGAACTAGACGAGAAGAAGACTCTAGATCTCACGACCTGCTGTCTCGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

8.86

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020590)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268161
rosa_rugosa	Rorug06G0039300
rosa_samantha	Rh6AG159200 Rh6AG312100 Rh6BG319000 Rh6CG154800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	362
AccII	CGCG	2 cut(s)	152, 318
AciI	CCGC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	265, 303
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	274, 365
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	341
BccI	CCATC	3 cut(s)	148, 261, 305
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	274, 365
BfaI	CTAG	2 cut(s)	323, 341
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	92, 261
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	92, 261
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 303
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	265, 303
BseMII	CTCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	152, 318
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	265, 303
BsmAI	GTCTC	2 cut(s)	274, 365
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	3, 31, 177, 219, 343
Bsp68I	TCGCGA	1 cut(s)	152
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	152, 318
BspMI	ACCTGC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	5 cut(s)	3, 31, 177, 219, 343
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	40, 69
BstDEI	CTNAG	2 cut(s)	112, 160
BstFNI	CGCG	2 cut(s)	152, 318
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	5 cut(s)	6, 34, 180, 222, 346
BstMAI	GTCTC	2 cut(s)	274, 365
BstMBI	GATC	5 cut(s)	3, 31, 177, 219, 343
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 259
BstSFI	CTRYAG	1 cut(s)	65
BstUI	CGCG	2 cut(s)	152, 318
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	167
BtuMI	TCGCGA	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	207
CviJI	RGCY	3 cut(s)	143, 158, 252
CviKI_1	RGCY	3 cut(s)	143, 158, 252
DdeI	CTNAG	2 cut(s)	112, 160
DpnI	GATC	5 cut(s)	5, 33, 179, 221, 345
DpnII	GATC	5 cut(s)	3, 31, 177, 219, 343
DrdI	GACNNNNNNGTC	1 cut(s)	170
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	90
FaiI	YATR	3 cut(s)	108, 168, 203
FspBI	CTAG	2 cut(s)	323, 341
GlaI	GCGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	110, 337
HpaII	CCGG	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	115, 236, 247, 281
Hpy188III	TCNNGA	5 cut(s)	151, 175, 341, 349, 369
HpyAV	CCTTC	3 cut(s)	85, 134, 138
HpyCH4III	ACNGT	2 cut(s)	40, 69
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	112, 160
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	3, 31, 177, 219, 343
LpnPI	CCDG	8 cut(s)	40, 77, 104, 175, 188, 274, 289, 367
MaeI	CTAG	2 cut(s)	323, 341
MaeII	ACGT	1 cut(s)	276
MalI	GATC	5 cut(s)	5, 33, 179, 221, 345
MboI	GATC	5 cut(s)	3, 31, 177, 219, 343
MboII	GAAGA	4 cut(s)	15, 229, 343, 346
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	3 cut(s)	46, 146, 237
MlyI	GAGTC	2 cut(s)	104, 331
MmeI	TCCRAC	2 cut(s)	225, 297
MnlI	CCTC	1 cut(s)	147
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	92, 261
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	152, 318
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	3, 31, 177, 219, 343
NruI	TCGCGA	1 cut(s)	152
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	2 cut(s)	104, 331
PpsI	GAGTC	2 cut(s)	104, 331
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	34
RruI	TCGCGA	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	3, 31, 177, 219, 343
SchI	GAGTC	2 cut(s)	104, 331
ScrFI	CCNGG	2 cut(s)	92, 261
SetI	ASST	5 cut(s)	96, 145, 194, 279, 356
SfcI	CTRYAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	46, 146, 237
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	323, 341
StyD4I	CCNGG	2 cut(s)	90, 259
TaaI	ACNGT	2 cut(s)	40, 69
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	34, 78, 209
TasI	AATT	3 cut(s)	46, 146, 237
XapI	RAATTY	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	340
XspI	CTAG	2 cut(s)	323, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.