Methylmalonate-semialdehyde dehydrogenase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g11430 |
| rosa_chinensis | RchiOBHm_Chr6g0270071 RchiOBHm_Chr6g0270111 |
| rosa_multiflora | Rmu_sc0000918.1_g000020 |
| rosa_samantha | Rh6DG162900 Rh6DG163100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 155 |
| Acc36I | ACCTGC | 1 cut(s) | 155 |
| AclI | AACGTT | 1 cut(s) | 106 |
| AcsI | RAATTY | 1 cut(s) | 214 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| AjnI | CCWGG | 2 cut(s) | 33, 220 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| ApoI | RAATTY | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 189 |
| BccI | CCATC | 1 cut(s) | 5 |
| BciT130I | CCWGG | 2 cut(s) | 35, 222 |
| BfmI | CTRYAG | 1 cut(s) | 203 |
| BfuAI | ACCTGC | 1 cut(s) | 155 |
| BisI | GCNGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 2 cut(s) | 35, 222 |
| BmrFI | CCNGG | 2 cut(s) | 35, 222 |
| BmsI | GCATC | 1 cut(s) | 137 |
| BseBI | CCWGG | 2 cut(s) | 35, 222 |
| BseXI | GCAGC | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 186 |
| BspMAI | CTGCAG | 1 cut(s) | 207 |
| BspMI | ACCTGC | 1 cut(s) | 155 |
| BssMI | GATC | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 222 |
| Bst4CI | ACNGT | 1 cut(s) | 196 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 1 cut(s) | 227 |
| BstKTI | GATC | 1 cut(s) | 189 |
| BstMBI | GATC | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstNI | CCWGG | 2 cut(s) | 35, 222 |
| BstSCI | CCNGG | 2 cut(s) | 33, 220 |
| BstSFI | CTRYAG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 189 |
| BtsI | GCAGTG | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 212 |
| BveI | ACCTGC | 1 cut(s) | 155 |
| Cac8I | GCNNGC | 1 cut(s) | 227 |
| CseI | GACGC | 1 cut(s) | 208 |
| CviJI | RGCY | 1 cut(s) | 229 |
| CviKI_1 | RGCY | 1 cut(s) | 229 |
| DpnI | GATC | 1 cut(s) | 188 |
| DpnII | GATC | 1 cut(s) | 186 |
| EcoRII | CCWGG | 2 cut(s) | 33, 220 |
| FaiI | YATR | 3 cut(s) | 61, 87, 156 |
| Fnu4HI | GCNGC | 1 cut(s) | 203 |
| Fsp4HI | GCNGC | 1 cut(s) | 203 |
| GluI | GCNGC | 1 cut(s) | 203 |
| HgaI | GACGC | 1 cut(s) | 208 |
| HincII | GTYRAC | 2 cut(s) | 17, 172 |
| HindII | GTYRAC | 2 cut(s) | 17, 172 |
| HpaI | GTTAAC | 1 cut(s) | 172 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 2 cut(s) | 17, 172 |
| Hpy8I | GTNNAC | 2 cut(s) | 17, 172 |
| HpyCH4III | ACNGT | 1 cut(s) | 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 2 cut(s) | 137, 205 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| HpySE526I | ACGT | 1 cut(s) | 106 |
| KspAI | GTTAAC | 1 cut(s) | 172 |
| Kzo9I | GATC | 1 cut(s) | 186 |
| Lsp1109I | GCAGC | 1 cut(s) | 189 |
| LweI | GCATC | 1 cut(s) | 137 |
| MaeII | ACGT | 1 cut(s) | 106 |
| MaeIII | GTNAC | 2 cut(s) | 70, 196 |
| MalI | GATC | 1 cut(s) | 188 |
| MboI | GATC | 1 cut(s) | 186 |
| MluCI | AATT | 5 cut(s) | 4, 65, 76, 112, 214 |
| MseI | TTAA | 3 cut(s) | 21, 48, 171 |
| MspR9I | CCNGG | 2 cut(s) | 35, 222 |
| MvaI | CCWGG | 2 cut(s) | 35, 222 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NdeII | GATC | 1 cut(s) | 186 |
| NmuCI | GTSAC | 1 cut(s) | 196 |
| PaqCI | CACCTGC | 1 cut(s) | 155 |
| PkrI | GCNGC | 1 cut(s) | 204 |
| Psp1406I | AACGTT | 1 cut(s) | 106 |
| Psp6I | CCWGG | 2 cut(s) | 33, 220 |
| PspGI | CCWGG | 2 cut(s) | 33, 220 |
| PstI | CTGCAG | 1 cut(s) | 207 |
| SaqAI | TTAA | 3 cut(s) | 21, 48, 171 |
| SatI | GCNGC | 1 cut(s) | 203 |
| Sau3AI | GATC | 1 cut(s) | 186 |
| ScrFI | CCNGG | 2 cut(s) | 35, 222 |
| SetI | ASST | 4 cut(s) | 36, 97, 109, 169 |
| SfaNI | GCATC | 1 cut(s) | 137 |
| SfcI | CTRYAG | 1 cut(s) | 203 |
| Sse9I | AATT | 5 cut(s) | 4, 65, 76, 112, 214 |
| StyD4I | CCNGG | 2 cut(s) | 33, 220 |
| TaaI | ACNGT | 1 cut(s) | 196 |
| TaiI | ACGT | 1 cut(s) | 109 |
| TasI | AATT | 5 cut(s) | 4, 65, 76, 112, 214 |
| Tru1I | TTAA | 3 cut(s) | 21, 48, 171 |
| Tru9I | TTAA | 3 cut(s) | 21, 48, 171 |
| TscAI | CASTG | 2 cut(s) | 201, 212 |
| TseFI | GTSAC | 1 cut(s) | 196 |
| TseI | GCWGC | 1 cut(s) | 202 |
| Tsp45I | GTSAC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 2 cut(s) | 17, 102 |
| TspRI | CASTG | 2 cut(s) | 201, 212 |
| XapI | RAATTY | 1 cut(s) | 214 |