RchiOBHm_Chr6g0270651

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021451
Physical Location & Seq
Reverse (-)
28552156 .. 28556001
3846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGATGAAGCTTAAACAAATTGTCAACCAGTTGTACAATGACTCCCACATAAAGCCTACAATTGTAGGACCTGGAGGATTTTATGATCAAAAGTGGTTTGCCACGCTTCTTCAGTTTTCTGGTTCAGGCGTAGTCAATGCTGTCACTCAGCATCTTTACAATCTGGGTCCAGATAGTTGGAAGCAATGGGTTCGAAGAAGAAGGAAAAGGCTGAACGAGAGAAAAAGTCAAAGAAGTTGTGTGATGCGCTCGAAAGCAAACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

88

Amino Acids

10.27

Weight (kDa)

10.81

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 2 - 65 5.4e-20 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021451)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0270651
rosa_laevigata RLG00000010285 RLG00000018863 RLG00000022678
rosa_rugosa Rorug05G0315300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 68, 167
AsuII TTCGAA 1 cut(s) 193
AvaII GGWCC 2 cut(s) 68, 167
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 72
BclI TGATCA 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 68, 167
BmgT120I GGNCC 2 cut(s) 68, 167
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 160, 234
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 177
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 68, 167
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 3 cut(s) 10, 55, 211
CviKI_1 RGCY 3 cut(s) 10, 55, 211
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 68, 167
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 70
FaiI YATR 3 cut(s) 50, 84, 265
FbaI TGATCA 1 cut(s) 85
GlaI GCGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 93
HhaI GCGC 1 cut(s) 249
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 147
HspAI GCGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 41, 57, 84, 105, 111, 149, 183
LweI GCATC 2 cut(s) 160, 234
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 101, 207, 210
MfeI CAATTG 1 cut(s) 60
MluCI AATT 2 cut(s) 18, 60
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 1 cut(s) 68
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 72
NdeII GATC 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 142
NspV TTCGAA 1 cut(s) 193
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 68, 167
PspPPI RGGWCCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 68, 167
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 72
SetI ASST 2 cut(s) 12, 73
SfaNI GCATC 2 cut(s) 160, 234
SfuI TTCGAA 1 cut(s) 193
SinI GGWCC 2 cut(s) 68, 167
Sse9I AATT 2 cut(s) 18, 60
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 2 cut(s) 193, 251
TasI AATT 2 cut(s) 18, 60
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 68, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.