Rorug05G0315300

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0021451
Physical Location & Seq
Forward (+)
37448404 .. 37450050
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0315300.1

Sequence Viewer

Length: 651 bp
ATGAGTAAGCTTCAGAGTGATACTCTCAGGGAGGCTATTTCTATCATCATGGTCGCTTCCAAGGAAAAGAATCGTAAGTTCACAGAAACTATAGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCCGTTAAGTTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTCAGAAGATCGGTTTGGAGTACATGGATGTAGAAGCACTGAAGAAGTTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCTAAGAAGTACCATGCCTTTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAACCCTTGTTTCTCACCAAGAATCCCTAGAGTCTAAAATTTCTGAGACCAAAGCAACAATTAAGTTCCAATTGAAGAAGGTTCTTTGCATGGGAGTTGCTGTAGGGAATGTCTCAATGGAGGAGAAGCAAATCTTCCAAAATGTGCAATTGAGTGTGAACTTCCTTGTTTCACTATTGAAAAAAAATTGGCAAAATGTAAAGTGCTTGAACCTGAAGACCACTATGGGGAAGCCATATCGCATTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

216

Amino Acids

24.54

Weight (kDa)

9.9

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 21 - 210 2.2e-51 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021451)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0270651
rosa_laevigata RLG00000010285 RLG00000018863 RLG00000022678
rosa_rugosa Rorug05G0315300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 3 cut(s) 83, 287, 635
AfaI GTAC 2 cut(s) 248, 317
AfiI CCNNNNNNNGG 2 cut(s) 367, 627
AgsI TTSAA 4 cut(s) 221, 475, 580, 610
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 8 cut(s) 87, 119, 224, 256, 275, 307, 394, 426
AluBI AGCT 2 cut(s) 10, 341
AluI AGCT 2 cut(s) 10, 341
Alw26I GTCTC 3 cut(s) 383, 440, 517
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 341
ApoI RAATTY 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 623
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 3 cut(s) 383, 440, 517
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 2 cut(s) 90, 501
BlpI GCTNAGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 151, 372
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 196, 341
BpiI GAAGAC 1 cut(s) 623
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu1102I GCTNAGC 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 383, 440
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 627
Bse1I ACTGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 367, 627
BseMII CTCAG 4 cut(s) 40, 224, 242, 435
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 367, 627
BsmAI GTCTC 3 cut(s) 383, 440, 517
Bso31I GGTCTC 2 cut(s) 383, 440
Bsp143I GATC 2 cut(s) 121, 234
Bsp1720I GCTNAGC 1 cut(s) 210
BspCNI CTCAG 4 cut(s) 39, 223, 241, 436
BspLI GGNNCC 2 cut(s) 151, 372
BspPI GGATC 1 cut(s) 116
BspTNI GGTCTC 2 cut(s) 383, 440
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 121, 234
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 26, 210, 228, 309, 444
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 124, 237
BstMAI GTCTC 3 cut(s) 383, 440, 517
BstMBI GATC 2 cut(s) 121, 234
BstMWI GCNNNNNNNGC 2 cut(s) 329, 338
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 2 cut(s) 199, 218
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 90, 501
BstV2I GAAGAC 1 cut(s) 623
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 151, 263
Cac8I GCNNGC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 247, 316
CviAII CATG 6 cut(s) 49, 196, 215, 250, 320, 490
CviJI RGCY 7 cut(s) 10, 35, 109, 227, 308, 341, 634
CviKI_1 RGCY 7 cut(s) 10, 35, 109, 227, 308, 341, 634
CviQI GTAC 2 cut(s) 247, 316
DdeI CTNAG 5 cut(s) 26, 210, 228, 309, 444
DpnI GATC 2 cut(s) 123, 236
DpnII GATC 2 cut(s) 121, 234
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 2 cut(s) 383, 440
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 3 cut(s) 83, 287, 635
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 6 cut(s) 52, 199, 218, 253, 323, 493
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 6 cut(s) 48, 195, 214, 249, 319, 489
FokI GGATG 1 cut(s) 266
FspBI CTAG 1 cut(s) 428
Hin1II CATG 6 cut(s) 52, 199, 218, 253, 323, 493
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 4 cut(s) 70, 355, 422, 431
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 81, 559
Hpy188I TCNGA 5 cut(s) 15, 102, 231, 337, 445
Hpy8I GTNNAC 2 cut(s) 81, 559
HpyAV CCTTC 2 cut(s) 181, 472
HpyCH4V TGCA 3 cut(s) 195, 489, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 338
HpyF3I CTNAG 5 cut(s) 26, 210, 228, 309, 444
Hsp92II CATG 6 cut(s) 52, 199, 218, 253, 323, 493
Kzo9I GATC 2 cut(s) 121, 234
LpnPI CCDG 6 cut(s) 13, 290, 360, 375, 387, 626
LweI GCATC 2 cut(s) 196, 341
MaeI CTAG 1 cut(s) 428
MalI GATC 2 cut(s) 123, 236
MboI GATC 2 cut(s) 121, 234
MboII GAAGA 6 cut(s) 233, 244, 280, 487, 526, 628
MfeI CAATTG 2 cut(s) 470, 548
MluCI AATT 7 cut(s) 115, 290, 438, 459, 470, 548, 586
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 4 cut(s) 25, 183, 217, 514
MseI TTAA 4 cut(s) 156, 275, 297, 462
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 2 cut(s) 470, 548
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 329, 338
NdeII GATC 2 cut(s) 121, 234
NlaIII CATG 6 cut(s) 52, 199, 218, 253, 323, 493
NlaIV GGNNCC 2 cut(s) 151, 372
NspI RCATGY 2 cut(s) 199, 218
PaeI GCATGC 1 cut(s) 199
PfeI GAWTC 3 cut(s) 70, 355, 422
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 151, 372
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 248, 317
RsaNI GTAC 2 cut(s) 247, 316
SaqAI TTAA 4 cut(s) 156, 275, 297, 462
Sau3AI GATC 2 cut(s) 121, 234
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 375
SetI ASST 5 cut(s) 12, 192, 343, 483, 615
SfaNI GCATC 2 cut(s) 196, 341
SfcI CTRYAG 2 cut(s) 90, 501
SinI GGWCC 1 cut(s) 371
SphI GCATGC 1 cut(s) 199
Sse9I AATT 7 cut(s) 115, 290, 438, 459, 470, 548, 586
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 60
TasI AATT 7 cut(s) 115, 290, 438, 459, 470, 548, 586
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 70, 355, 422
Tru1I TTAA 4 cut(s) 156, 275, 297, 462
Tru9I TTAA 4 cut(s) 156, 275, 297, 462
TscAI CASTG 2 cut(s) 151, 270
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 2 cut(s) 151, 270
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 438
XceI RCATGY 2 cut(s) 199, 218
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.