RLG00000022678

heparanase-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
9263938 .. 9264974
1037 bp
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UTR
Exon/CDS
Intron
RLM00000022678

Sequence Viewer

Length: 456 bp
ATGGAACTCTGTGTCTCTTTGATTCTCTTTCTGATTTCTCTGCCAACATTTTTGACCAAAGATGTTGGACATGCTAGCGTTGTAGTTGATGGGACAGTAGCTACTGCACAGAGCTTGTCTCATCCTCTGCTTGCCAAGTCAATTCAAGCTTTCAATCAGTTGAGGATCAGAATTGGGGGTTCCTTGCAAGATCAAGTATTGTATGGTGTAGGAGATTTGAAATATCCTTGCCATCCTTTCAGAAAGCAGAAGGGTGGGTTGTTTGGATTTTCTACAGGATGTTTACCTATGAGGAGGCACCACAAAGGCGTGGATGTTTGGGTTGGAGATTGGGACTCTAGCAATGCCTATGATTTTATTAATTATACAGTTTCGAAGGGCTACCACATAAATTCATGGGAGTTGGGTAATGAGCTCTGTGGTAATGGTGTTGGAGGTAGAGTTGGAGCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.47

Weight (kDa)

8.72

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 38 - 101 2.1e-22 Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n PF03662 101 - 150 2.2e-17 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021451)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0270651
rosa_laevigata RLG00000010285 RLG00000018863 RLG00000022678
rosa_rugosa Rorug05G0315300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 391
AgsI TTSAA 3 cut(s) 146, 154, 220
AluBI AGCT 5 cut(s) 101, 114, 149, 415, 449
AluI AGCT 5 cut(s) 101, 114, 149, 415, 449
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 19, 123
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 391
AseI ATTAAT 1 cut(s) 360
AsuII TTCGAA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 417
BccI CCATC 2 cut(s) 83, 240
BcoDI GTCTC 2 cut(s) 19, 123
BfaI CTAG 2 cut(s) 75, 339
BfmI CTRYAG 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 181, 299
BmtI GCTAGC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu14I TTCGAA 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bse3DI GCAATG 1 cut(s) 349
BseGI GGATG 4 cut(s) 121, 232, 284, 319
BseMI GCAATG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 417
BslFI GGGAC 2 cut(s) 106, 347
BsmAI GTCTC 2 cut(s) 19, 123
BsmFI GGGAC 2 cut(s) 106, 347
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 2 cut(s) 165, 190
BspLI GGNNCC 2 cut(s) 181, 299
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 173
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 349
BssMI GATC 2 cut(s) 165, 190
Bst4CI ACNGT 2 cut(s) 97, 370
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 76, 132
BstF5I GGATG 4 cut(s) 121, 232, 284, 319
BstKTI GATC 2 cut(s) 168, 193
BstMAI GTCTC 2 cut(s) 19, 123
BstMBI GATC 2 cut(s) 165, 190
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 273
BtsCI GGATG 4 cut(s) 121, 232, 284, 319
Cac8I GCNNGC 2 cut(s) 76, 132
CviAII CATG 2 cut(s) 71, 396
CviJI RGCY 6 cut(s) 101, 114, 149, 381, 415, 449
CviKI_1 RGCY 6 cut(s) 101, 114, 149, 381, 415, 449
DpnI GATC 2 cut(s) 167, 192
DpnII GATC 2 cut(s) 165, 190
Ecl136II GAGCTC 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 417
FaeI CATG 2 cut(s) 74, 399
FaiI YATR 7 cut(s) 72, 204, 290, 351, 366, 389, 397
FaqI GGGAC 2 cut(s) 106, 347
FatI CATG 2 cut(s) 70, 395
FokI GGATG 4 cut(s) 108, 219, 291, 326
FriOI GRGCYC 1 cut(s) 417
FspBI CTAG 2 cut(s) 75, 339
Hin1II CATG 2 cut(s) 74, 399
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 2 cut(s) 22, 335
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 3 cut(s) 33, 170, 242
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 244, 370
HpyCH4III ACNGT 2 cut(s) 97, 370
HpyCH4V TGCA 2 cut(s) 107, 187
Hsp92II CATG 2 cut(s) 74, 399
Kzo9I GATC 2 cut(s) 165, 190
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 1 cut(s) 261
MaeI CTAG 2 cut(s) 75, 339
MalI GATC 2 cut(s) 167, 192
MboI GATC 2 cut(s) 165, 190
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 4 cut(s) 141, 171, 361, 391
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 4 cut(s) 46, 304, 412, 424
MnlI CCTC 5 cut(s) 135, 156, 285, 288, 428
MseI TTAA 1 cut(s) 360
NdeII GATC 2 cut(s) 165, 190
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 74, 399
NlaIV GGNNCC 2 cut(s) 181, 299
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 374
PfeI GAWTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 181, 299
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 360
Sau3AI GATC 2 cut(s) 165, 190
SchI GAGTC 1 cut(s) 329
SduI GDGCHC 1 cut(s) 417
SetI ASST 7 cut(s) 103, 116, 151, 289, 417, 439, 451
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 374
Sse9I AATT 4 cut(s) 141, 171, 361, 391
SspMI CTAG 2 cut(s) 75, 339
SstI GAGCTC 1 cut(s) 417
TaaI ACNGT 2 cut(s) 97, 370
TaqI TCGA 1 cut(s) 374
TasI AATT 4 cut(s) 141, 171, 361, 391
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TspDTI ATGAA 1 cut(s) 384
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 1 cut(s) 391
XceI RCATGY 1 cut(s) 74
XspI CTAG 2 cut(s) 75, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.