RchiOBHm_Chr6g0273291

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020575
Physical Location & Seq
Forward (+)
34150106 .. 34151406
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGCCTACAACAGGCTTATCTTTTCTTTTTCTATTTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCCTTCTGCTCAGTCTACTCTCTCTCTTCTGTTCATCTTTTTTCATCCTCTCCGACTCCAACGTTTCCAAAATCCTAGCCTCTGCCATCCGCTACATCCTCAAGTCTCTCCACATCGGTGGTTAAGCAATTGGAGCCGTAGATCGACGGTGGTGGAGACTCTCTCAGTGGCGAACCGGTTCGACGCGTCCGTTTTCACTCCGGTCATCTCGGTTCCAACGCAGCAAGCCAGCATACTTTTGGCTCTGTTCGCCAGCGGAGATGGGTACAGAGTGGAAGAGAATGACAGGTGTTTGATGGTCTATAATATTGCCTATCAATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

133

Amino Acids

14.99

Weight (kDa)

8.84

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0273291 RchiOBHm_Chr7g0180461
rosa_roxburghii Rroxscaffold_2G00141140 Rroxscaffold_5G00348410
rosa_samantha Rh4CG129500 Rh7DG311200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 164, 330
AclI AACGTT 1 cut(s) 136
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 258
AgeI ACCGGT 1 cut(s) 249
AleI CACNNNNGTG 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 184, 224
ApeKI GCWGC 1 cut(s) 295
AsiGI ACCGGT 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 307
BccI CCATC 3 cut(s) 168, 329, 364
BceAI ACGGC 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 184, 224
BfaI CTAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 209, 288
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpuEI CTTGAG 1 cut(s) 159
BsaWI WCCGGW 2 cut(s) 249, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 249
BseGI GGATG 3 cut(s) 118, 160, 169
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 98, 252
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 260
BshTI ACCGGT 1 cut(s) 249
BsiSI CCGG 2 cut(s) 250, 275
BslI CCNNNNNNNGG 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 184, 224
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 2 cut(s) 164, 330
BspCNI CTCAG 2 cut(s) 97, 251
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 209, 288
BsrFI RCCGGY 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 249
BssMI GATC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 105, 345
BstC8I GCNNGC 3 cut(s) 300, 304, 328
BstDEI CTNAG 2 cut(s) 84, 238
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 118, 160, 169
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 184, 224
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 207, 323
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 192
BtsCI GGATG 3 cut(s) 118, 160, 169
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 300, 304, 328
Cfr10I RCCGGY 1 cut(s) 249
CseI GACGC 2 cut(s) 249, 266
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 249
CviJI RGCY 5 cut(s) 15, 153, 210, 302, 317
CviKI_1 RGCY 5 cut(s) 15, 153, 210, 302, 317
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 84, 238
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 105, 345
EarI CTCTTC 2 cut(s) 105, 345
EcoNI CCTNNNNNAGG 1 cut(s) 9
FaiI YATR 2 cut(s) 308, 378
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 3 cut(s) 105, 147, 156
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 296
HapII CCGG 2 cut(s) 250, 275
HgaI GACGC 2 cut(s) 249, 266
HinfI GANTC 2 cut(s) 129, 232
HpaII CCGG 2 cut(s) 250, 275
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 2 cut(s) 223, 260
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 323
HpyF3I CTNAG 2 cut(s) 84, 238
HpySE526I ACGT 1 cut(s) 136
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 263, 288, 316, 340, 346
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 136
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 92, 362
MfeI CAATTG 1 cut(s) 202
MluCI AATT 1 cut(s) 202
MluI ACGCGT 1 cut(s) 258
MlyI GAGTC 2 cut(s) 123, 226
MmeI TCCRAC 3 cut(s) 151, 157, 314
MnlI CCTC 4 cut(s) 52, 132, 164, 183
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 2 cut(s) 250, 275
MunI CAATTG 1 cut(s) 202
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 207, 323
NdeII GATC 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 209, 288
OliI CACNNNNGTG 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 249
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 2 cut(s) 123, 226
PpsI GAGTC 2 cut(s) 123, 226
Psp1406I AACGTT 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 209, 288
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 215
SchI GAGTC 2 cut(s) 123, 226
SetI ASST 2 cut(s) 139, 365
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 164, 330
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 218, 255
TasI AATT 1 cut(s) 202
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 97, 107
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.