Rh4CG129500

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0020575
Physical Location & Seq
Forward (+)
25400079 .. 25402741
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG129500.1

Sequence Viewer

Length: 345 bp
ATGGAGTTGCCAAAGAATGAACCTGATCAGTTTGATAAGAGAAGACAAAAAGGTGCAGAAGGAGTATTACTACAGCAATTGCAGATTTCTTCATGTTTTGGAAGCCAATTAAACGTCCTTGCCGTTGCTGGACAATGGTTAAGCAATTGGAGCCGTAGATCTACGGTGGTGGGGACTCTCTCAGTGGCGAACCGGTTCGACGAGTCCGTTTTCACTCCGGTCATCTCGGTTCCAACGCAGCAAGCCAGGATGCTTTTGGCTCTGTTCGGCGGCGGAGATGGGTACAGAGTGGAAGAGAATGACAGGTGTTTGATGGTCTATAATATTGCCTATCAATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

114

Amino Acids

12.74

Weight (kDa)

6.2

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0273291 RchiOBHm_Chr7g0180461
rosa_roxburghii Rroxscaffold_2G00141140 Rroxscaffold_5G00348410
rosa_samantha Rh4CG129500 Rh7DG311200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 270, 273
AfaI GTAC 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 192
AjnI CCWGG 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 238
AsiGI ACCGGT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 272, 307
BceAI ACGGC 2 cut(s) 107, 138
BciT130I CCWGG 1 cut(s) 247
BclI TGATCA 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 158
BisI GCNGC 2 cut(s) 239, 271
BlsI GCNGC 2 cut(s) 240, 272
Bme1390I CCNGG 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 152, 231
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 49
BsaWI WCCGGW 2 cut(s) 192, 217
Bse118I RCCGGY 1 cut(s) 192
BseBI CCWGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 75
BshTI ACCGGT 1 cut(s) 192
BsiSI CCGG 2 cut(s) 193, 218
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 25, 158
BspACI CCGC 2 cut(s) 270, 273
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 152, 231
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssMI GATC 2 cut(s) 25, 158
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 2 cut(s) 28, 161
BstMBI GATC 2 cut(s) 25, 158
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 192
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 1 cut(s) 93
CviJI RGCY 4 cut(s) 105, 153, 245, 260
CviKI_1 RGCY 4 cut(s) 105, 153, 245, 260
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 27, 160
DpnII GATC 2 cut(s) 25, 158
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 245
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 94, 321
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 92
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 239, 271
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 239, 271
GluI GCNGC 2 cut(s) 239, 271
HapII CCGG 2 cut(s) 193, 218
Hin1II CATG 1 cut(s) 96
HinfI GANTC 2 cut(s) 175, 203
HpaII CCGG 2 cut(s) 193, 218
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 56, 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 158
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 7 cut(s) 36, 114, 206, 231, 232, 259, 289
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 114
MalI GATC 2 cut(s) 27, 160
MboI GATC 2 cut(s) 25, 158
MboII GAAGA 3 cut(s) 54, 81, 305
MfeI CAATTG 2 cut(s) 77, 145
MflI RGATCY 1 cut(s) 158
MluCI AATT 3 cut(s) 77, 107, 145
MlyI GAGTC 2 cut(s) 169, 212
MmeI TCCRAC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 2 cut(s) 110, 140
MspI CCGG 2 cut(s) 193, 218
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 2 cut(s) 77, 145
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 25, 158
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 152, 231
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 204
PdmI GAANNNNTTC 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 2 cut(s) 240, 272
PleI GAGTC 2 cut(s) 169, 211
PpsI GAGTC 2 cut(s) 169, 211
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 152, 231
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 110, 140
SatI GCNGC 2 cut(s) 239, 271
Sau3AI GATC 2 cut(s) 25, 158
SchI GAGTC 2 cut(s) 169, 212
ScrFI CCNGG 1 cut(s) 247
SetI ASST 4 cut(s) 25, 55, 117, 308
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 71
Sse9I AATT 3 cut(s) 77, 107, 145
SsiI CCGC 2 cut(s) 270, 273
SspI AATATT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 77, 107, 145
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 110, 140
Tru9I TTAA 2 cut(s) 110, 140
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 33, 81
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.