RchiOBHm_Chr7g0180461

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020575
Physical Location & Seq
Reverse (-)
2364360 .. 2364966
607 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16092

Sequence Viewer

Length: 426 bp
ATGGTGACACGTGGTTTTTATTGGATCCAATGGCCTACAACAGGCTTAGCTTTTCTTTTTCTATTTGTTTCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTTCTGCTCAGTCTACTCTCTCTCTTCTGTTCATCTTTTTTCATCCTCTCCGACTCCGACGTTTCCAAAATCCTAGCCTCTGCCATCCGCTACATCCTCAAGTCTCTCCACATCGGTGGTTAAGCAATTGGAGCCGTAGATCGACGGTGGTGGAGACTCTCTCAGTGGCGAACCGGTTCGACGCGACCGTTTTCACTCCGGTCATCTCGGTTCCAACGCAGCAAGCCAGCATGCTTTTGGCTCTGTTCGCCGGCGAAGATGGGTACAGAGTGGAAGAGAATGACAAGTGTTTGATGGTCTATAATATTGCCTATCAATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

141

Amino Acids

16.14

Weight (kDa)

9.23

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0273291 RchiOBHm_Chr7g0180461
rosa_roxburghii Rroxscaffold_2G00141140 Rroxscaffold_5G00348410
rosa_samantha Rh4CG129500 Rh7DG311200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 19, 32
AcvI CACGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 273
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 208, 248
AlwI GGATC 2 cut(s) 19, 32
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 319
AsiGI ACCGGT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 24
BbrPI CACGTG 1 cut(s) 11
BbvI GCAGC 1 cut(s) 331
BccI CCATC 3 cut(s) 192, 353, 388
BceAI ACGGC 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 208, 248
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 320
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 321
BmiI GGNNCC 3 cut(s) 26, 233, 312
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu1102I GCTNAGC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 273, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 2 cut(s) 273, 350
BseGI GGATG 3 cut(s) 142, 184, 193
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 122, 276
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 34
BshTI ACCGGT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 288
BsiSI CCGG 3 cut(s) 274, 299, 351
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 208, 248
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 24, 239
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 121, 275
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 3 cut(s) 26, 233, 312
BspPI GGATC 2 cut(s) 19, 32
BsrFI RCCGGY 2 cut(s) 273, 350
BssAI RCCGGY 2 cut(s) 273, 350
BssMI GATC 2 cut(s) 24, 239
Bst4CI ACNGT 2 cut(s) 247, 289
Bst6I CTCTTC 2 cut(s) 129, 369
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 324, 328, 332, 352
BstDEI CTNAG 3 cut(s) 46, 108, 262
BstENI CCTNNNNNAGG 1 cut(s) 39
BstF5I GGATG 3 cut(s) 142, 184, 193
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 2 cut(s) 27, 242
BstMAI GTCTC 2 cut(s) 208, 248
BstMBI GATC 2 cut(s) 24, 239
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 231, 347
BstNSI RCATGY 1 cut(s) 334
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 24
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 142, 184, 193
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 4 cut(s) 324, 328, 332, 352
Cfr10I RCCGGY 2 cut(s) 273, 350
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 364
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 1 cut(s) 331
CviJI RGCY 7 cut(s) 34, 45, 50, 177, 234, 326, 341
CviKI_1 RGCY 7 cut(s) 34, 45, 50, 177, 234, 326, 341
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 3 cut(s) 46, 108, 262
DpnI GATC 2 cut(s) 26, 241
DpnII GATC 2 cut(s) 24, 239
Eam1104I CTCTTC 2 cut(s) 129, 369
EarI CTCTTC 2 cut(s) 129, 369
Eco72I CACGTG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 39
FaeI CATG 1 cut(s) 334
FaiI YATR 2 cut(s) 332, 402
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 3 cut(s) 129, 171, 180
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 320
HaeIII GGCC 1 cut(s) 34
HapII CCGG 3 cut(s) 274, 299, 351
HgaI GACGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 334
HinfI GANTC 2 cut(s) 153, 256
HpaII CCGG 3 cut(s) 274, 299, 351
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 152, 158
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 3 cut(s) 162, 247, 284
HpyAV CCTTC 2 cut(s) 107, 111
HpyCH4III ACNGT 2 cut(s) 247, 289
HpyCH4IV ACGT 2 cut(s) 10, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 347
HpyF3I CTNAG 3 cut(s) 46, 108, 262
HpySE526I ACGT 2 cut(s) 10, 160
Hsp92II CATG 1 cut(s) 334
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 24, 239
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 5 cut(s) 27, 287, 312, 340, 364
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 10, 160
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 26, 241
MboI GATC 2 cut(s) 24, 239
MboII GAAGA 3 cut(s) 116, 368, 386
MfeI CAATTG 1 cut(s) 226
MflI RGATCY 1 cut(s) 24
MluCI AATT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 147, 250
MmeI TCCRAC 3 cut(s) 175, 181, 338
MnlI CCTC 4 cut(s) 82, 156, 188, 207
MreI CGCCGGCG 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 3 cut(s) 274, 299, 351
MunI CAATTG 1 cut(s) 226
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 231, 347
NaeI GCCGGC 1 cut(s) 352
NdeII GATC 2 cut(s) 24, 239
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 3 cut(s) 26, 233, 312
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 214
PaeI GCATGC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 2 cut(s) 147, 250
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
PpsI GAGTC 2 cut(s) 147, 250
Ppu21I YACGTR 1 cut(s) 11
PspCI CACGTG 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 26, 233, 312
PsuI RGATCY 1 cut(s) 24
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 2 cut(s) 24, 239
SchI GAGTC 2 cut(s) 147, 250
SetI ASST 3 cut(s) 13, 52, 163
SgrAI CRCCGGYG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 1 cut(s) 334
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 188
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 247, 289
TaiI ACGT 2 cut(s) 13, 163
TaqI TCGA 2 cut(s) 242, 279
TasI AATT 1 cut(s) 226
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 121, 131
TspRI CASTG 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 39
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.