Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020575

Physical Location & Seq

Genomic Coordinates Forward (+)

79468615 .. 79472243

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTCTACAACAAGCTTAGCTTTTCTTTTTCTATTTTTTTCCTCTCTCTCTCTCTCATTCCTTCTGTTATCTTTTTTCATCATCTCCGACTCCGACGTTTCCAAAATCCTAGCCTCTGCCCTCCGCTGCATCCTCAAGTCTCTCCACATCGGTGGTTAAACAATTGGAGCCGGAGATCGACGGTGGTGGAGACTCTCTCAGTGGCGAACCGGTTCGACGCGTCCGTTTTCACTCCGGTCATCTCGGTTCCAACGCAGCAAGCTAGCATACTTTTGGCTCTGTTCGCCGGCGGAGATGGGTACAGAGTGGAAGAGAATGACAGGTGTTTGATGGTCTATAATATTGGCTATCAATCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DELLA GRAS

Protein Analysis

120

Amino Acids

13.78

Weight (kDa)

9.58

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020575)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273291 RchiOBHm_Chr7g0180461
rosa_roxburghii	Rroxscaffold_2G00141140 Rroxscaffold_5G00348410
rosa_samantha	Rh4CG129500 Rh7DG311200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	125, 291
AfaI	GTAC	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	210
AleI	CACNNNNGTG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	16, 21, 263
AluI	AGCT	3 cut(s)	16, 21, 263
Alw26I	GTCTC	2 cut(s)	145, 185
ApeKI	GCWGC	2 cut(s)	127, 256
AsiGI	ACCGGT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	212
AsuNHI	GCTAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	114, 268
BccI	CCATC	2 cut(s)	290, 325
BcoDI	GTCTC	2 cut(s)	145, 185
BfaI	CTAG	2 cut(s)	111, 264
BisI	GCNGC	2 cut(s)	128, 257
BlpI	GCTNAGC	1 cut(s)	17
BlsI	GCNGC	2 cut(s)	129, 258
BmiI	GGNNCC	2 cut(s)	170, 249
BmsI	GCATC	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu1102I	GCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	210, 235
Bse118I	RCCGGY	2 cut(s)	210, 287
BseGI	GGATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	114, 268
Bsh1236I	CGCG	1 cut(s)	221
BshTI	ACCGGT	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	172, 211, 236, 288
BsmAI	GTCTC	2 cut(s)	145, 185
Bsp143I	GATC	1 cut(s)	176
Bsp1720I	GCTNAGC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	125, 291
BspCNI	CTCAG	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	170, 249
BspOI	GCTAGC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	210, 287
BssAI	RCCGGY	2 cut(s)	210, 287
BssMI	GATC	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	261, 265, 289
BstDEI	CTNAG	2 cut(s)	17, 199
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	145, 185
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	114, 268
BstXI	CCANNNNNNTGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	261, 265, 289
Cfr10I	RCCGGY	2 cut(s)	210, 287
CseI	GACGC	2 cut(s)	210, 227
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	210
CviJI	RGCY	7 cut(s)	16, 21, 114, 171, 263, 278, 348
CviKI_1	RGCY	7 cut(s)	16, 21, 114, 171, 263, 278, 348
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	17, 199
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	306
FaiI	YATR	2 cut(s)	269, 339
FalI	AAGNNNNNCTT	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	128, 257
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	128, 257
FspBI	CTAG	2 cut(s)	111, 264
GluI	GCNGC	2 cut(s)	128, 257
HapII	CCGG	4 cut(s)	172, 211, 236, 288
HgaI	GACGC	2 cut(s)	210, 227
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	90, 193
HpaII	CCGG	4 cut(s)	172, 211, 236, 288
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	89, 95
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	3 cut(s)	99, 184, 221
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	17, 199
HpySE526I	ACGT	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	5 cut(s)	185, 224, 249, 301, 307
Lsp1109I	GCAGC	2 cut(s)	114, 268
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	111, 264
MaeII	ACGT	1 cut(s)	97
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	323
MfeI	CAATTG	1 cut(s)	163
MluCI	AATT	1 cut(s)	163
MluI	ACGCGT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	84, 187
MmeI	TCCRAC	3 cut(s)	112, 118, 275
MnlI	CCTC	4 cut(s)	53, 125, 132, 144
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	4 cut(s)	172, 211, 236, 288
MunI	CAATTG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	284
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	176
NgoMIV	GCCGGC	1 cut(s)	287
NheI	GCTAGC	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	170, 249
OliI	CACNNNNGTG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	129, 258
PleI	GAGTC	2 cut(s)	84, 187
PpsI	GAGTC	2 cut(s)	84, 187
PspN4I	GGNNCC	2 cut(s)	170, 249
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	128, 257
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	84, 187
SetI	ASST	5 cut(s)	18, 23, 100, 265, 326
SfaNI	GCATC	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	2 cut(s)	125, 291
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	111, 264
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	179, 216
TasI	AATT	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	2 cut(s)	127, 256
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	111, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.