RchiOBHm_Chr6g0276121

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020567
Physical Location & Seq
Reverse (-)
38120608 .. 38121000
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGTTCTCCTTAGGCAGGGTGTTCATTAAGGTCAAGATCATGCTTGACTGGGATCCCAATGGCAAGCAAGGACCCATGACTCCTCTGCCTGATCTTGTTACAATCCACCAACCAAAGGATGATGAATTGATGAGTTTGTCAGGCGGGCACCAGAAATTGAAGCAGCACCTATTTTGGCCCCAACTGATATTGAGGTCCCAGCCATCCCAGCTCCCCCAGTGGCTTAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

9.3

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020567)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0276121
rosa_multiflora Rmu_sc0027894.1_g000001
rosa_rugosa Rorug05G0489800
rosa_samantha Rh1CG318200 Rh2BG423500 Rh6AG118200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 47, 60
AfiI CCNNNNNNNGG 2 cut(s) 15, 115
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 2 cut(s) 47, 60
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 71, 177, 195
AvaII GGWCC 2 cut(s) 71, 195
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 150
BamHI GGATCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 211
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme18I GGWCC 2 cut(s) 71, 195
BmgT120I GGNCC 3 cut(s) 71, 177, 195
BmiI GGNNCC 5 cut(s) 54, 73, 149, 179, 197
BmrI ACTGGG 2 cut(s) 58, 211
BmuI ACTGGG 2 cut(s) 58, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 115
Bse1I ACTGG 2 cut(s) 53, 217
Bse21I CCTNAGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 124, 203
BseLI CCNNNNNNNGG 2 cut(s) 15, 115
BseNI ACTGG 2 cut(s) 53, 217
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 2 cut(s) 198, 207
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 15, 115
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 36, 52, 91
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 5 cut(s) 54, 73, 149, 179, 197
BspPI GGATC 2 cut(s) 47, 60
BspT107I GGYRCC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 53, 217
BssMI GATC 3 cut(s) 36, 52, 91
BstC8I GCNNGC 2 cut(s) 65, 146
BstDEI CTNAG 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 124, 203
BstKTI GATC 3 cut(s) 39, 55, 94
BstMBI GATC 3 cut(s) 36, 52, 91
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 10
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 124, 203
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 65, 146
Cfr13I GGNCC 3 cut(s) 71, 177, 195
CviAII CATG 2 cut(s) 40, 76
CviJI RGCY 4 cut(s) 178, 202, 211, 223
CviKI_1 RGCY 4 cut(s) 178, 202, 211, 223
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 38, 54, 93
DpnII GATC 3 cut(s) 36, 52, 91
Eco47I GGWCC 2 cut(s) 71, 195
Eco81I CCTNAGG 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoO109I RGGNCCY 2 cut(s) 71, 195
FaeI CATG 2 cut(s) 43, 79
FaiI YATR 2 cut(s) 41, 77
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 39, 75
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 2 cut(s) 131, 190
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 2 cut(s) 202, 211
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 2 cut(s) 43, 79
HinfI GANTC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 2 cut(s) 43, 79
Kzo9I GATC 3 cut(s) 36, 52, 91
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 7 cut(s) 34, 102, 126, 164, 212, 221, 230
Lsp1109I GCAGC 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 38, 54, 93
MboI GATC 3 cut(s) 36, 52, 91
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 125, 155
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 2 cut(s) 93, 186
MseI TTAA 3 cut(s) 27, 225, 232
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 3 cut(s) 36, 52, 91
NlaIII CATG 2 cut(s) 43, 79
NlaIV GGNNCC 5 cut(s) 54, 73, 149, 179, 197
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 2 cut(s) 71, 195
Psp5II RGGWCCY 2 cut(s) 71, 195
PspFI CCCAGC 2 cut(s) 198, 207
PspN4I GGNNCC 5 cut(s) 54, 73, 149, 179, 197
PspPI GGNCC 3 cut(s) 71, 177, 195
PspPPI RGGWCCY 2 cut(s) 71, 195
PsuI RGATCY 1 cut(s) 52
SaqAI TTAA 3 cut(s) 27, 225, 232
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 36, 52, 91
Sau96I GGNCC 3 cut(s) 71, 177, 195
SchI GAGTC 1 cut(s) 73
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 33, 171, 197, 213
SinI GGWCC 2 cut(s) 71, 195
Sse9I AATT 2 cut(s) 125, 155
SsiI CCGC 1 cut(s) 144
TasI AATT 2 cut(s) 125, 155
Tru1I TTAA 3 cut(s) 27, 225, 232
Tru9I TTAA 3 cut(s) 27, 225, 232
TscAI CASTG 1 cut(s) 224
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 13, 138
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 71, 195
XagI CCTNNNNNAGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.