Rorug05G0489800

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009195
Physical Location & Seq
Forward (+)
67347469 .. 67348630
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0489800.1

Sequence Viewer

Length: 507 bp
ATGGAGTGTTGTGGGAGACCTAACAGGAGTGACGTTCATTTGTCAAGTGAAGAAGAGGCAAAGATTGAGTCCGAGACAAGAGAACACTTTGATGGAGTAGCTCCCAAACGTCACTCGAAGCCTCAACGCAGCGAATACGCGTCTCAATATGTCGATGTTCTCTCTAAAGATGGTAAACAAGAGTCCAATCCTGAACTTGTTGAGTTCCAACGACTCGAAAATGATTCACAGCAGAAATTGGTTCTGAATGGAAGTGAGGTGAGCGAGGAATTTGTGGAGACAGACTACTACAAGGATCTGAATTGCATTGACAAGCAACACCACACAACAGGAACAGGGTTTATCAAAGTTCAAAACCCTGGCGACAGAGGTTACCGCCTTGAACCTGATTCCGACACCAGCACTCAGGCGTCTTGCCAGTGCAACCCAGCAACTAATGACTGGGTACCAGATGCTGCTAGTGCGGTACCTTCTGCTTCAGGCAAGCCAGGCAGGAGTGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

168

Amino Acids

18.72

Weight (kDa)

4.81

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 445, 466
AccB1I GGYRCC 2 cut(s) 445, 466
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 376, 464
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 2 cut(s) 447, 468
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 353, 383
AjnI CCWGG 2 cut(s) 358, 487
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 4 cut(s) 10, 68, 147, 272
AlwI GGATC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 129, 455
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp718I GGTACC 2 cut(s) 445, 466
AsuHPI GGTGA 1 cut(s) 271
BanI GGYRCC 2 cut(s) 445, 466
BbvI GCAGC 2 cut(s) 141, 442
BccI CCATC 2 cut(s) 86, 164
BciT130I CCWGG 2 cut(s) 360, 489
BcoDI GTCTC 4 cut(s) 10, 68, 147, 272
BfaI CTAG 1 cut(s) 459
BisI GCNGC 2 cut(s) 130, 456
BlsI GCNGC 2 cut(s) 131, 457
Bme1390I CCNGG 2 cut(s) 360, 489
BmiI GGNNCC 2 cut(s) 447, 468
BmrFI CCNGG 2 cut(s) 360, 489
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 358
Bse1I ACTGG 2 cut(s) 418, 446
BseBI CCWGG 2 cut(s) 360, 489
BseDI CCNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 418, 446
BseXI GCAGC 2 cut(s) 141, 442
BseYI CCCAGC 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 140
BshNI GGYRCC 2 cut(s) 445, 466
BsmAI GTCTC 4 cut(s) 10, 68, 147, 272
BsmBI CGTCTC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 2 cut(s) 376, 464
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 447, 468
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 2 cut(s) 445, 466
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 418, 446
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 2 cut(s) 360, 489
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 1 cut(s) 405
BstEII GGTNACC 1 cut(s) 371
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 4 cut(s) 10, 68, 147, 272
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 461, 489
BstNI CCWGG 2 cut(s) 360, 489
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 358, 487
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 141, 442
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 1 cut(s) 455
CseI GACGC 2 cut(s) 129, 399
Csp6I GTAC 2 cut(s) 446, 467
CviJI RGCY 3 cut(s) 101, 121, 487
CviKI_1 RGCY 3 cut(s) 101, 121, 487
CviQI GTAC 2 cut(s) 446, 467
DdeI CTNAG 1 cut(s) 405
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 358, 487
Esp3I CGTCTC 1 cut(s) 147
FaiI YATR 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 130, 456
Fsp4HI GCNGC 2 cut(s) 130, 456
FspBI CTAG 1 cut(s) 459
GluI GCNGC 2 cut(s) 130, 456
GsaI CCCAGC 1 cut(s) 431
HgaI GACGC 2 cut(s) 129, 399
Hin1I GRCGYC 1 cut(s) 410
HinfI GANTC 5 cut(s) 68, 182, 213, 224, 389
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 73, 246, 300, 394
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 480
HpyCH4IV ACGT 2 cut(s) 33, 109
HpyCH4V TGCA 2 cut(s) 306, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 489
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 33, 109
Hsp92I GRCGYC 1 cut(s) 410
KpnI GGTACC 2 cut(s) 449, 470
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 2 cut(s) 141, 442
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 459
MaeII ACGT 2 cut(s) 33, 109
MaeIII GTNAC 4 cut(s) 29, 110, 371, 497
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 2 cut(s) 62, 65
MflI RGATCY 1 cut(s) 295
MluCI AATT 3 cut(s) 236, 269, 301
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 3 cut(s) 77, 191, 207
MmeI TCCRAC 2 cut(s) 232, 417
MnlI CCTC 5 cut(s) 49, 132, 250, 259, 362
MslI CAYNNNNRTG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 360, 489
MvaI CCWGG 2 cut(s) 360, 489
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 461, 489
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 447, 468
NmuCI GTSAC 3 cut(s) 29, 110, 497
PfeI GAWTC 2 cut(s) 224, 389
PkrI GCNGC 2 cut(s) 131, 457
PleI GAGTC 3 cut(s) 76, 190, 207
PpsI GAGTC 3 cut(s) 76, 190, 207
Psp6I CCWGG 2 cut(s) 358, 487
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 2 cut(s) 358, 487
PspN4I GGNNCC 2 cut(s) 447, 468
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 447, 468
RsaNI GTAC 2 cut(s) 446, 467
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 2 cut(s) 130, 456
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 3 cut(s) 77, 191, 207
ScrFI CCNGG 2 cut(s) 360, 489
SetI ASST 8 cut(s) 22, 36, 103, 112, 261, 373, 388, 472
SfaNI GCATC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 3 cut(s) 236, 269, 301
SsiI CCGC 2 cut(s) 376, 464
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 358, 487
TaiI ACGT 2 cut(s) 36, 112
TaqI TCGA 3 cut(s) 116, 153, 216
TasI AATT 3 cut(s) 236, 269, 301
TfiI GAWTC 2 cut(s) 224, 389
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 3 cut(s) 29, 110, 497
TseI GCWGC 2 cut(s) 129, 455
Tsp45I GTSAC 3 cut(s) 29, 110, 497
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 425
XapI RAATTY 1 cut(s) 269
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.