MD00G1016800.v1.1

beta-glucosidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
2418437 .. 2428657
10221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1016800.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGCAAAGAAGGTCTTGTTGAAGGAATATGATGAAGAAACTCATGAAGTCTGTCGCAGTGACTTTCCTCCCAACTTCGTTTTTGGCGTTGCCACTTCCGCATATCAAGTAGAGGGAGCCTGCAAGGACGGTGGTAGGGGTCCCAGCATTTGGGATGCTTTTTCACACTCAAAAGGGAATATCATTGATGGAAGCAATGGGGACGTTGCAGTGGATCAATATTATCGGTATAAGGAAGATGTTGAACTCATTGCCAAGTTGGGATTTGAAGCTCATCGTTTTTCCATAGCATGGTCTCGAATATTCCCTGATGGTTTGGGAACCAAAATCAATGAAGAAGGGATTACTTACTATAACAATTTCATCAATGCTCTCCTTGAAAAGGGCATCCAACCTTATGTAACACTGTACCATTGGGATCTACCCTTGTACCTTCATGAGAATATGGGAGGGTGGCTGAATAAGCAAATTGTAGAATACTTCTCAGTCTATGCAGACACCTGCTTTGCAAGCTTTGGCGATAGAGTAAAGGACTGGATCACTTTTAATGAGCCTCTTCAGACTGCAATTAATGGTTATGGTGTTGGGATATTTGCTCCTGGAAGGCACTCGTCAACAGAACCATATTTGGTTGCACACCACCAACTATTGGCACATGCTGCTGCTGTTTCCATATACCGAAGCAAGTATAAGGACAAGCAAGGGGGACAAGTTGGCTTGGTTGTAGACTGTGAATGGGCAGAGGCTAATTCAGACACAATTGAAGATAAAGTTGCTGCAGCAAGGCGCCTAGATTTTCAGCTTGGATGGTACTTAGATCCAATATATCATGGGGAATACCCCAAAGTTATGCGTGAAAGACTTGGAGATCGGCTTCCCATATTTTCAGAGAAAGATAAGGAGTTGCTTAAGAACTCAGTAGACTTTATTGGTCTGAATCACTATACATCAAGATTTATTGCTCATGGAAGAGATAACCATGATGAGGGTGATTTTTATAAAGCACAAGGGATAGAGAGAATTGATGAATGGGAAGGGGGTGAGGCTATTGGTGAGAAGGCAGCATCAGAATGGCTGTATGTTGTTCCTTGGGGCATGCATAAGGTTTTGAATTACATAGCGCAGAGATACAATAATCCCCCAATATATGTTACTGAGAATGGTATGGATGACGAAGATAATGACACCTCCTCACTTCATGAAATGCTGGATGACAAACTGAGAGTTAGTTACTTTAAGAGATACCTTTCAGCAGTTGCCAAAGCAATAAGGGATGGGGCAGATGTAAGGGGATACTTTGCGTGGTCATTACTAGATAACTTTGAGTGGGCTCAAGGATATACCAAGCGTTTTGGTTTGGTTTATGTTGACTATAAGAATGGGCTTGCGAGACACCCAAAATCTTCTGCTTACTGGTTCTTGAGGTTCTTCAAAGGTGTTGAAGGCAAATATGGAAAGGAAGAGTAA

Protein Analysis

489

Amino Acids

55.93

Weight (kDa)

5.46

Isoelectric Point (pI)

21.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 20 - 476 5.1e-168 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 786
AccB7I CCANNNNNTGG 3 cut(s) 150, 291, 649
AccI GTMKAC 2 cut(s) 726, 921
AciI CCGC 1 cut(s) 99
AclWI GGATC 4 cut(s) 222, 426, 545, 812
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 3 cut(s) 410, 431, 812
AfiI CCNNNNNNNGG 5 cut(s) 150, 291, 382, 649, 985
AflII CTTAAG 1 cut(s) 908
AgsI TTSAA 8 cut(s) 22, 245, 269, 380, 764, 1111, 1432, 1442
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 3 cut(s) 272, 513, 802
AluI AGCT 3 cut(s) 272, 513, 802
Alw26I GTCTC 2 cut(s) 300, 1384
AlwI GGATC 4 cut(s) 222, 426, 545, 812
ApeKI GCWGC 5 cut(s) 659, 662, 776, 779, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 2 cut(s) 789, 1123
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 1001, 1052, 1064
AvaII GGWCC 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BanI GGYRCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 1333
BbvI GCAGC 5 cut(s) 646, 649, 763, 791, 1073
BccI CCATC 4 cut(s) 182, 305, 801, 1268
BciT130I CCWGG 1 cut(s) 600
BciVI GTATCC 1 cut(s) 1286
BcoDI GTCTC 2 cut(s) 300, 1384
BfaI CTAG 2 cut(s) 791, 1313
BfmI CTRYAG 1 cut(s) 777
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 1 cut(s) 1286
BisI GCNGC 5 cut(s) 660, 663, 777, 780, 1062
BlsI GCNGC 5 cut(s) 661, 664, 778, 781, 1063
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 5 cut(s) 118, 141, 142, 322, 788
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 145, 396, 1073
BpuEI CTTGAG 2 cut(s) 1317, 1441
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 1088
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 291, 382, 649, 985
Bse1I ACTGG 2 cut(s) 539, 1418
Bse3DI GCAATG 2 cut(s) 202, 249
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 1088
BseGI GGATG 6 cut(s) 160, 387, 812, 1174, 1216, 1279
BseLI CCNNNNNNNGG 5 cut(s) 150, 291, 382, 649, 985
BseMI GCAATG 2 cut(s) 202, 249
BseMII CTCAG 4 cut(s) 498, 930, 1146, 1211
BseNI ACTGG 2 cut(s) 539, 1418
BseRI GAGGAG 1 cut(s) 1180
BseXI GCAGC 5 cut(s) 646, 649, 763, 791, 1073
BseYI CCCAGC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 786
BslFI GGGAC 3 cut(s) 126, 215, 720
BslI CCNNNNNNNGG 5 cut(s) 150, 291, 382, 649, 985
BsmAI GTCTC 2 cut(s) 300, 1384
BsmFI GGGAC 3 cut(s) 126, 215, 720
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 1333
Bsp143I GATC 5 cut(s) 214, 418, 537, 817, 868
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 4 cut(s) 497, 929, 1147, 1212
BspHI TCATGA 3 cut(s) 43, 436, 1198
BspLI GGNNCC 5 cut(s) 118, 141, 142, 322, 788
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 4 cut(s) 222, 426, 545, 812
BspT107I GGYRCC 1 cut(s) 786
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 202, 249
BsrI ACTGG 2 cut(s) 539, 1418
BssECI CCNNGG 1 cut(s) 1088
BssMI GATC 5 cut(s) 214, 418, 537, 817, 868
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 1 cut(s) 1088
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 131, 408, 731
Bst6I CTCTTC 3 cut(s) 561, 964, 1455
BstACI GRCGYC 1 cut(s) 787
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 121, 511, 1097, 1386
BstDEI CTNAG 5 cut(s) 484, 814, 916, 1155, 1220
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 6 cut(s) 160, 387, 812, 1174, 1216, 1279
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 2 cut(s) 789, 1123
BstKTI GATC 5 cut(s) 217, 421, 540, 820, 871
BstMAI GTCTC 2 cut(s) 300, 1384
BstMBI GATC 5 cut(s) 214, 418, 537, 817, 868
BstMWI GCNNNNNNNGC 4 cut(s) 98, 463, 510, 659
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 659, 1099
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 1 cut(s) 777
BstV1I GCAGC 5 cut(s) 646, 649, 763, 791, 1073
BstX2I RGATCY 2 cut(s) 418, 817
BstYI RGATCY 2 cut(s) 418, 817
BsuI GTATCC 1 cut(s) 1286
BtsCI GGATG 6 cut(s) 160, 387, 812, 1174, 1216, 1279
BtsI GCAGTG 2 cut(s) 64, 216
BtsIMutI CAGTG 3 cut(s) 64, 216, 404
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 121, 511, 1097, 1386
CciI TCATGA 3 cut(s) 43, 436, 1198
CfoI GCGC 2 cut(s) 789, 1123
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 3 cut(s) 409, 430, 811
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 9 cut(s) 44, 291, 437, 656, 830, 965, 980, 1096, 1199
CviQI GTAC 3 cut(s) 409, 430, 811
DdeI CTNAG 5 cut(s) 484, 814, 916, 1155, 1220
DinI GGCGCC 1 cut(s) 788
DpnI GATC 5 cut(s) 216, 420, 539, 819, 870
DpnII GATC 5 cut(s) 214, 418, 537, 817, 868
Eam1104I CTCTTC 3 cut(s) 561, 964, 1455
EarI CTCTTC 3 cut(s) 561, 964, 1455
Eco130I CCWWGG 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 1333
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 1088
EcoT22I ATGCAT 1 cut(s) 1101
EcoT38I GRGCYC 1 cut(s) 1333
EgeI GGCGCC 1 cut(s) 788
EheI GGCGCC 1 cut(s) 788
ErhI CCWWGG 1 cut(s) 1088
FaeI CATG 9 cut(s) 47, 294, 440, 659, 833, 968, 983, 1099, 1202
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 3 cut(s) 126, 215, 720
FatI CATG 9 cut(s) 43, 290, 436, 655, 829, 964, 979, 1095, 1198
FblI GTMKAC 2 cut(s) 726, 921
Fnu4HI GCNGC 5 cut(s) 660, 663, 777, 780, 1062
FokI GGATG 6 cut(s) 167, 374, 819, 1181, 1223, 1286
FriOI GRGCYC 1 cut(s) 1333
Fsp4HI GCNGC 5 cut(s) 660, 663, 777, 780, 1062
FspBI CTAG 2 cut(s) 791, 1313
GlaI GCGC 2 cut(s) 788, 1122
GluI GCNGC 5 cut(s) 660, 663, 777, 780, 1062
GsaI CCCAGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 790
HhaI GCGC 2 cut(s) 789, 1123
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 9 cut(s) 47, 294, 440, 659, 833, 968, 983, 1099, 1202
Hin6I GCGC 2 cut(s) 787, 1121
HinP1I GCGC 2 cut(s) 787, 1121
HincII GTYRAC 2 cut(s) 615, 1369
HindII GTYRAC 2 cut(s) 615, 1369
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 1 cut(s) 937
HphI GGTGA 3 cut(s) 1001, 1052, 1064
Hpy166II GTNNAC 4 cut(s) 615, 727, 922, 1369
Hpy188I TCNGA 5 cut(s) 561, 754, 889, 936, 1069
Hpy188III TCNNGA 6 cut(s) 44, 297, 437, 951, 1199, 1420
Hpy8I GTNNAC 4 cut(s) 615, 727, 922, 1369
HpyAV CCTTC 8 cut(s) 4, 16, 332, 443, 597, 1028, 1051, 1436
HpyCH4III ACNGT 3 cut(s) 131, 408, 731
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 8 cut(s) 123, 209, 494, 509, 566, 635, 779, 1099
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 463, 510, 659
HpyF3I CTNAG 5 cut(s) 484, 814, 916, 1155, 1220
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 9 cut(s) 47, 294, 440, 659, 833, 968, 983, 1099, 1202
HspAI GCGC 2 cut(s) 787, 1121
KasI GGCGCC 1 cut(s) 786
KflI GGGWCCC 1 cut(s) 140
Kzo9I GATC 5 cut(s) 214, 418, 537, 817, 868
LmnI GCTCC 2 cut(s) 116, 601
LpnPI CCDG 9 cut(s) 133, 157, 321, 514, 520, 585, 612, 1193, 1399
Lsp1109I GCAGC 5 cut(s) 646, 649, 763, 791, 1073
LweI GCATC 3 cut(s) 145, 396, 1073
MaeI CTAG 2 cut(s) 791, 1313
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 59, 400, 1150, 1229
MalI GATC 5 cut(s) 216, 420, 539, 819, 870
MboI GATC 5 cut(s) 214, 418, 537, 817, 868
MboII GAAGA 9 cut(s) 47, 248, 347, 548, 776, 981, 1187, 1395, 1420
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 418, 817
MhlI GDGCHC 1 cut(s) 1333
MluCI AATT 7 cut(s) 358, 468, 567, 748, 759, 1020, 1111
Mly113I GGCGCC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 415
Mph1103I ATGCAT 1 cut(s) 1101
MseI TTAA 4 cut(s) 546, 570, 909, 1236
MslI CAYNNNNRTG 1 cut(s) 1069
MspCI CTTAAG 1 cut(s) 908
MspR9I CCNGG 1 cut(s) 600
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 98, 463, 510, 659
NarI GGCGCC 1 cut(s) 787
NdeII GATC 5 cut(s) 214, 418, 537, 817, 868
NlaIII CATG 9 cut(s) 47, 294, 440, 659, 833, 968, 983, 1099, 1202
NlaIV GGNNCC 5 cut(s) 118, 141, 142, 322, 788
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 1101
NspI RCATGY 2 cut(s) 659, 1099
PaeI GCATGC 1 cut(s) 1099
PagI TCATGA 3 cut(s) 43, 436, 1198
PaqCI CACCTGC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 937
PflMI CCANNNNNTGG 3 cut(s) 150, 291, 649
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 5 cut(s) 661, 664, 778, 781, 1063
PluTI GGCGCC 1 cut(s) 790
PpuMI RGGWCCY 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 570
PsiI TTATAA 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 5 cut(s) 118, 141, 142, 322, 788
PspPI GGNCC 1 cut(s) 140
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 2 cut(s) 418, 817
RsaI GTAC 3 cut(s) 410, 431, 812
RsaNI GTAC 3 cut(s) 409, 430, 811
RseI CAYNNNNRTG 1 cut(s) 1069
SaqAI TTAA 4 cut(s) 546, 570, 909, 1236
SatI GCNGC 5 cut(s) 660, 663, 777, 780, 1062
Sau3AI GATC 5 cut(s) 214, 418, 537, 817, 868
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 1333
SfaNI GCATC 3 cut(s) 145, 396, 1073
SfcI CTRYAG 1 cut(s) 777
SfoI GGCGCC 1 cut(s) 788
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 1069
SmlI CTYRAG 3 cut(s) 908, 1332, 1420
SmoI CTYRAG 3 cut(s) 908, 1332, 1420
SphI GCATGC 1 cut(s) 1099
Sse9I AATT 7 cut(s) 358, 468, 567, 748, 759, 1020, 1111
SsiI CCGC 1 cut(s) 99
SspDI GGCGCC 1 cut(s) 786
SspI AATATT 2 cut(s) 221, 303
SspMI CTAG 2 cut(s) 791, 1313
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 1 cut(s) 1088
TaaI ACNGT 3 cut(s) 131, 408, 731
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 298
TasI AATT 7 cut(s) 358, 468, 567, 748, 759, 1020, 1111
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 4 cut(s) 546, 570, 909, 1236
Tru9I TTAA 4 cut(s) 546, 570, 909, 1236
TscAI CASTG 3 cut(s) 64, 216, 411
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 5 cut(s) 659, 662, 776, 779, 1061
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 8 cut(s) 48, 60, 348, 352, 425, 1041, 1187, 1215
TspRI CASTG 3 cut(s) 64, 216, 411
Van91I CCANNNNNTGG 3 cut(s) 150, 291, 649
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 140
VspI ATTAAT 1 cut(s) 570
XagI CCTNNNNNAGG 1 cut(s) 380
XceI RCATGY 2 cut(s) 659, 1099
XmiI GTMKAC 2 cut(s) 726, 921
XspI CTAG 2 cut(s) 791, 1313
Zsp2I ATGCAT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.