Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009195

Physical Location & Seq

Genomic Coordinates Reverse (-)

22230667 .. 22232474

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCGCGAAAGACTTGGAGATCGGCTTCCCATATTTTCAGAGAAAGATAAGGAGTTGCTTAAGAACTCAGTAGACTTTATTGGTCTGAATCACTATACATCAAGATTTATTGCTCATGGAAAAGATGACCATGATGAGGGTGATTTTTATAAAGCACAAGGGATAGAGAGAGTTGATGAATGGGAAGCGGGTGAGGCTATTGGTGAGAAGGCAGCATCAGAATGGCTGTATGTTGTTCCTTGGGGCATGCATAAGGTTCTGAATTACATAGCGCAGAGATACAATAATCCCCCAATATATGTTACTGAGAATGGTATGGATGACGAAGATAATGACACCTCCCCACTTCATGAAATGCTGGATGACAAACTGAGAGTTAGTTACTTTAAGAGATACCTTTCAGCAGTTGCCAAAGCGATAAGGGATGGGGCAGATGTAAGGGGATACTTTGCGTGGTCGTTACTGGATAACTTTGAGTGGGCTCAAGGATATACCAAGCGTTTTGGTTTGGTTTACGTTGACTATAAGAATGGGCTCTCGAGACACCCGAAATCTTCTGCTTACTGGTTCATGAGGTTCTTCAAAGGTGTTGAAGGCAAATATGGAAAGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008422 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009866 GO:0009873 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015926 GO:0016787 GO:0016798 GO:0019748 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0080134 GO:0097366 GO:0098542 GO:1901135 GO:1901657 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

206

Amino Acids

23.98

Weight (kDa)

5.59

Isoelectric Point (pI)

15.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	4 - 194	2.9e-56	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36890 AT5G36890
fragaria_vesca	FvH4_2g00020 FvH4_2g00020 FvH4_2g00020
malus_domestica	MD00G1016800.v1.1 MD02G1137800.v1.1
prunus_persica	Prupe.6G366100_v2.0.a1 Prupe.6G366200_v2.0.a1
pyrus_communis	pycom02g10910 pycom17g24000
rosa_chinensis	RchiOBHm_Chr6g0249281
rosa_laevigata	RLG00000015597
rosa_multiflora	Rmu_sc0004832.1_g000009
rosa_roxburghii	Rroxscaffold_7G00217940
rosa_rugosa	Rorug05G0489800 Rorug05G0489900
rosa_samantha	Rh5BG535000 Rh6AG000800 Rh6BG009300 Rh6CG000100
rosa_wichuraiana	Rw6G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	583, 593
Alw26I	GTCTC	1 cut(s)	535
Ama87I	CYCGRG	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	6, 274
AsuHPI	GGTGA	3 cut(s)	152, 203, 215
AvaI	CYCGRG	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	484, 537
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	535
BfrI	CTTAAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	468, 569
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	3 cut(s)	325, 367, 430
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	3 cut(s)	81, 297, 362
BseNI	ACTGG	2 cut(s)	468, 569
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	484, 537
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	80, 298, 363
BspFNI	CGCG	1 cut(s)	6
BspHI	TCATGA	2 cut(s)	349, 570
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	468, 569
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	67, 306, 371
BstF5I	GGATG	3 cut(s)	325, 367, 430
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 274
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	250
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	325, 367, 430
Cac8I	GCNNGC	1 cut(s)	248
CciI	TCATGA	2 cut(s)	349, 570
CfoI	GCGC	2 cut(s)	6, 274
CviAII	CATG	5 cut(s)	116, 131, 247, 350, 571
CviJI	RGCY	5 cut(s)	25, 197, 226, 482, 535
CviKI_1	RGCY	5 cut(s)	25, 197, 226, 482, 535
DdeI	CTNAG	3 cut(s)	67, 306, 371
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	2 cut(s)	484, 537
Eco88I	CYCGRG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	484, 537
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	5 cut(s)	119, 134, 250, 353, 574
FatI	CATG	5 cut(s)	115, 130, 246, 349, 570
FauI	CCCGC	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	3 cut(s)	332, 374, 437
FriOI	GRGCYC	2 cut(s)	484, 537
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	2 cut(s)	5, 273
GluI	GCNGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	6, 274
Hin1II	CATG	5 cut(s)	119, 134, 250, 353, 574
Hin6I	GCGC	2 cut(s)	4, 272
HinP1I	GCGC	2 cut(s)	4, 272
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	3 cut(s)	152, 203, 215
Hpy166II	GTNNAC	3 cut(s)	73, 514, 520
Hpy188I	TCNGA	4 cut(s)	40, 87, 220, 261
Hpy188III	TCNNGA	5 cut(s)	102, 350, 538, 540, 571
Hpy8I	GTNNAC	3 cut(s)	73, 514, 520
HpyAV	CCTTC	2 cut(s)	202, 587
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	67, 306, 371
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	5 cut(s)	119, 134, 250, 353, 574
HspAI	GCGC	2 cut(s)	4, 272
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	3 cut(s)	344, 449, 550
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	301, 380, 459
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	338, 546, 571
MhlI	GDGCHC	2 cut(s)	484, 537
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	4 cut(s)	130, 187, 349, 567
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	2 cut(s)	60, 387
MslI	CAYNNNNRTG	1 cut(s)	220
MspCI	CTTAAG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	5 cut(s)	119, 134, 250, 353, 574
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	538
PagI	TCATGA	2 cut(s)	349, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	60, 387
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	484, 537
SetI	ASST	6 cut(s)	258, 341, 399, 519, 578, 589
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	3 cut(s)	59, 483, 538
SmoI	CTYRAG	3 cut(s)	59, 483, 538
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	239
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	539
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	60, 387
Tru9I	TTAA	2 cut(s)	60, 387
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	192, 338, 366, 559
Vha464I	CTTAAG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.