Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009195

Physical Location & Seq

Genomic Coordinates Reverse (-)

14541289 .. 14546230

Gene Structure 4942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGCACAGAAGCTTAACTTGCTTAATCTCGCCGTCCCTCCGGTCACCCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGATTGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATACAAGGAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTACCATTGGGATCTCCCATCACATCTCCAGGAAGCAATCGGAGGTTGGACAAATAGGAAAATTGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAAGCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTATATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCACATCATCAGGTTCTGGCCCATGCAACTGCTGTATCCATATATAGAAGCAAGTACAAGGAAAGTCAAGGTGGACAAATCGGTTTGTCAGTTGATTGTGAATGGGCAGAGCCAAACTCTGAGAAACCAGAAGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTTGTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATTTACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCACTATACGTCGAGGTTGATTTCTCATGTCTCAAACAAAGAAGCTGAGAGTAACTTTTACCAAGCACAAGAATTGGAGAGGATTGTTGAACTGGAAAATGGAGATTTGATAGGCGAAAGGGCTGCTTCGGATTGGCTTTATGCTGTGCCTTGGGGAATCCGAAAGACATTGAATTACATGAGCAAAAAATATAACCACCCTCCAATATTTATCACTGAAAATGGTATGGATGATGAAGATGATGGATCGGCCTCTATTCATGATATGCTTGACGATAAACGTAGAGTTGACTATTTCAAGAGTTACCTTGCCAACGTCTCCCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTGCGTGGTCGCTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGGTATATGTAGACTACAAGAACGGTTTAACCCGTCACCCAAAATCATCTGCTTACTGGTTCATGAAATTTCTGAAAGGTGATGAAGAAAACAAAGGTAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008422 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009866 GO:0009873 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015926 GO:0016787 GO:0016798 GO:0019748 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0080134 GO:0097366 GO:0098542 GO:1901135 GO:1901657 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

490

Amino Acids

56.08

Weight (kDa)

5.39

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	18 - 480	4.6e-174	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36890 AT5G36890
fragaria_vesca	FvH4_2g00020 FvH4_2g00020 FvH4_2g00020
malus_domestica	MD00G1016800.v1.1 MD02G1137800.v1.1
prunus_persica	Prupe.6G366100_v2.0.a1 Prupe.6G366200_v2.0.a1
pyrus_communis	pycom02g10910 pycom17g24000
rosa_chinensis	RchiOBHm_Chr6g0249281
rosa_laevigata	RLG00000015597
rosa_multiflora	Rmu_sc0004832.1_g000009
rosa_roxburghii	Rroxscaffold_7G00217940
rosa_rugosa	Rorug05G0489800 Rorug05G0489900
rosa_samantha	Rh5BG535000 Rh6AG000800 Rh6BG009300 Rh6CG000100
rosa_wichuraiana	Rw6G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	1374
AccIII	TCCGGA	1 cut(s)	892
AciI	CCGC	3 cut(s)	52, 96, 782
AclWI	GGATC	6 cut(s)	219, 423, 542, 815, 828, 1198
AcsI	RAATTY	2 cut(s)	297, 1430
AcuI	CTGAAG	2 cut(s)	342, 539
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	407, 692, 1346
AgsI	TTSAA	8 cut(s)	110, 377, 803, 917, 1034, 1117, 1243, 1277
AjnI	CCWGG	4 cut(s)	312, 432, 595, 1266
AluBI	AGCT	2 cut(s)	13, 989
AluI	AGCT	2 cut(s)	13, 989
Alw26I	GTCTC	6 cut(s)	297, 640, 831, 864, 979, 1267
AlwI	GGATC	6 cut(s)	219, 423, 542, 815, 828, 1198
AlwNI	CAGNNNCTG	1 cut(s)	652
Aor13HI	TCCGGA	1 cut(s)	892
AoxI	GGCC	5 cut(s)	310, 481, 654, 937, 1194
ApeKI	GCWGC	3 cut(s)	779, 1067, 1315
ApoI	RAATTY	2 cut(s)	297, 1430
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	858, 1339
AspS9I	GGNCC	2 cut(s)	137, 655
AsuHPI	GGTGA	6 cut(s)	37, 67, 527, 577, 1391, 1454
AvaII	GGWCC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BamHI	GGATCC	1 cut(s)	820
BbsI	GAAGAC	2 cut(s)	774, 1284
BbvI	GCAGC	3 cut(s)	766, 1054, 1302
BccI	CCATC	5 cut(s)	179, 302, 430, 804, 1181
BceAI	ACGGC	3 cut(s)	17, 211, 376
BcgI	CGANNNNNNTGC	2 cut(s)	1049, 1083
BciT130I	CCWGG	4 cut(s)	314, 434, 597, 1268
BciVI	GTATCC	2 cut(s)	682, 1292
BcoDI	GTCTC	6 cut(s)	297, 640, 831, 864, 979, 1267
BfaI	CTAG	1 cut(s)	882
BfuI	GTATCC	2 cut(s)	682, 1292
BisI	GCNGC	3 cut(s)	780, 1068, 1316
BlsI	GCNGC	3 cut(s)	781, 1069, 1317
Bme1390I	CCNGG	4 cut(s)	314, 434, 597, 1268
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 655
BmiI	GGNNCC	2 cut(s)	138, 822
BmrFI	CCNGG	4 cut(s)	314, 434, 597, 1268
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	2 cut(s)	774, 1284
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
BpmI	CTGGAG	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	2 cut(s)	297, 640
BsaJI	CCNNGG	5 cut(s)	313, 561, 934, 1094, 1266
BsaWI	WCCGGW	2 cut(s)	40, 892
Bse1I	ACTGG	3 cut(s)	536, 1041, 1424
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	892
BseBI	CCWGG	4 cut(s)	314, 434, 597, 1268
BseDI	CCNNGG	5 cut(s)	313, 561, 934, 1094, 1266
BseGI	GGATG	2 cut(s)	815, 1180
BseJI	GATNNNNATC	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	747, 981
BseNI	ACTGG	3 cut(s)	536, 1041, 1424
BseXI	GCAGC	3 cut(s)	766, 1054, 1302
BshFI	GGCC	5 cut(s)	312, 483, 656, 939, 1196
BsiSI	CCGG	2 cut(s)	41, 893
BslFI	GGGAC	3 cut(s)	20, 150, 941
BsmAI	GTCTC	6 cut(s)	297, 640, 831, 864, 979, 1267
BsmBI	CGTCTC	1 cut(s)	1267
BsmFI	GGGAC	3 cut(s)	20, 150, 941
BsnI	GGCC	5 cut(s)	312, 483, 656, 939, 1196
Bso31I	GGTCTC	2 cut(s)	297, 640
Bsp13I	TCCGGA	1 cut(s)	892
Bsp143I	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
BspACI	CCGC	3 cut(s)	52, 96, 782
BspANI	GGCC	5 cut(s)	312, 483, 656, 939, 1196
BspCNI	CTCAG	2 cut(s)	748, 982
BspEI	TCCGGA	1 cut(s)	892
BspHI	TCATGA	2 cut(s)	1204, 1425
BspLI	GGNNCC	2 cut(s)	138, 822
BspPI	GGATC	6 cut(s)	219, 423, 542, 815, 828, 1198
BspTNI	GGTCTC	2 cut(s)	297, 640
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	536, 1041, 1424
BssECI	CCNNGG	5 cut(s)	313, 561, 934, 1094, 1266
BssMI	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	934, 1094
Bst2UI	CCWGG	4 cut(s)	314, 434, 597, 1268
Bst4CI	ACNGT	2 cut(s)	578, 1388
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	756, 990
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	815, 1180
BstHHI	GCGC	2 cut(s)	858, 1339
BstKTI	GATC	8 cut(s)	214, 244, 358, 418, 537, 621, 823, 1193
BstMAI	GTCTC	6 cut(s)	297, 640, 831, 864, 979, 1267
BstMBI	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 95, 503
BstNI	CCWGG	4 cut(s)	314, 434, 597, 1268
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	4 cut(s)	312, 432, 595, 1266
BstV1I	GCAGC	3 cut(s)	766, 1054, 1302
BstV2I	GAAGAC	2 cut(s)	774, 1284
BstX2I	RGATCY	2 cut(s)	415, 820
BstXI	CCANNNNNNTGG	2 cut(s)	147, 866
BstYI	RGATCY	2 cut(s)	415, 820
BsuI	GTATCC	2 cut(s)	682, 1292
BsuRI	GGCC	5 cut(s)	312, 483, 656, 939, 1196
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	815, 1180
BtsIMutI	CAGTG	3 cut(s)	529, 574, 1158
CaiI	CAGNNNCTG	1 cut(s)	652
CciI	TCATGA	2 cut(s)	1204, 1425
CfoI	GCGC	2 cut(s)	858, 1339
Cfr13I	GGNCC	2 cut(s)	137, 655
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	406, 691, 1345
CviAII	CATG	6 cut(s)	659, 924, 971, 1123, 1205, 1426
CviQI	GTAC	3 cut(s)	406, 691, 1345
DdeI	CTNAG	2 cut(s)	756, 990
DpnI	GATC	8 cut(s)	213, 243, 357, 417, 536, 620, 822, 1192
DpnII	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	934, 1094
Eco31I	GGTCTC	2 cut(s)	297, 640
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	342, 539
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	4 cut(s)	312, 432, 595, 1266
EcoT14I	CCWWGG	2 cut(s)	934, 1094
ErhI	CCWWGG	2 cut(s)	934, 1094
Esp3I	CGTCTC	1 cut(s)	1267
FaeI	CATG	6 cut(s)	662, 927, 974, 1126, 1208, 1429
FalI	AAGNNNNNCTT	5 cut(s)	34, 1054, 1086, 1286, 1318
FaqI	GGGAC	3 cut(s)	20, 150, 941
FatI	CATG	6 cut(s)	658, 923, 970, 1122, 1204, 1425
FblI	GTMKAC	1 cut(s)	1374
Fnu4HI	GCNGC	3 cut(s)	780, 1068, 1316
FokI	GGATG	2 cut(s)	822, 1187
Fsp4HI	GCNGC	3 cut(s)	780, 1068, 1316
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	2 cut(s)	857, 1338
GluI	GCNGC	3 cut(s)	780, 1068, 1316
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	5 cut(s)	312, 483, 656, 939, 1196
HapII	CCGG	2 cut(s)	41, 893
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	858, 1339
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	6 cut(s)	662, 927, 974, 1126, 1208, 1429
Hin6I	GCGC	2 cut(s)	856, 1337
HinP1I	GCGC	2 cut(s)	856, 1337
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	178, 261, 1101
HpaII	CCGG	2 cut(s)	41, 893
HphI	GGTGA	6 cut(s)	37, 67, 527, 577, 1391, 1454
Hpy166II	GTNNAC	6 cut(s)	159, 710, 1234, 1288, 1347, 1375
Hpy188I	TCNGA	6 cut(s)	446, 558, 757, 1075, 1106, 1437
Hpy188III	TCNNGA	7 cut(s)	182, 294, 374, 893, 1205, 1243, 1426
Hpy8I	GTNNAC	6 cut(s)	159, 710, 1234, 1288, 1347, 1375
Hpy99I	CGWCG	2 cut(s)	89, 958
HpyAV	CCTTC	8 cut(s)	75, 82, 88, 104, 119, 164, 329, 1459
HpyCH4III	ACNGT	2 cut(s)	578, 1388
HpyCH4IV	ACGT	3 cut(s)	953, 1225, 1260
HpyCH4V	TGCA	4 cut(s)	491, 593, 662, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 95, 503
HpyF3I	CTNAG	2 cut(s)	756, 990
HpySE526I	ACGT	3 cut(s)	953, 1225, 1260
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	662, 927, 974, 1126, 1208, 1429
HspAI	GCGC	2 cut(s)	856, 1337
Kpn2I	TCCGGA	1 cut(s)	892
Kzo9I	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
Lsp1109I	GCAGC	3 cut(s)	766, 1054, 1302
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	3 cut(s)	953, 1225, 1260
MaeIII	GTNAC	6 cut(s)	43, 191, 397, 995, 1247, 1397
MalI	GATC	8 cut(s)	213, 243, 357, 417, 536, 620, 822, 1192
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
MflI	RGATCY	2 cut(s)	415, 820
MluCI	AATT	8 cut(s)	254, 297, 465, 508, 792, 1016, 1117, 1430
MmeI	TCCRAC	2 cut(s)	98, 431
MroI	TCCGGA	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	5 cut(s)	15, 24, 363, 542, 1391
MspI	CCGG	2 cut(s)	41, 893
MspR9I	CCNGG	4 cut(s)	314, 434, 597, 1268
MvaI	CCWGG	4 cut(s)	314, 434, 597, 1268
MwoI	GCNNNNNNNGC	3 cut(s)	19, 95, 503
NdeII	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
NlaIII	CATG	6 cut(s)	662, 927, 974, 1126, 1208, 1429
NlaIV	GGNNCC	2 cut(s)	138, 822
NmuCI	GTSAC	2 cut(s)	43, 1397
PagI	TCATGA	2 cut(s)	1204, 1425
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	178, 261, 1101
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	781, 1069, 1317
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	4 cut(s)	312, 432, 595, 1266
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	4 cut(s)	312, 432, 595, 1266
PspN4I	GGNNCC	2 cut(s)	138, 822
PspPI	GGNCC	2 cut(s)	137, 655
PstNI	CAGNNNCTG	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	415, 820
RsaI	GTAC	3 cut(s)	407, 692, 1346
RsaNI	GTAC	3 cut(s)	406, 691, 1345
SaqAI	TTAA	5 cut(s)	15, 24, 363, 542, 1391
SatI	GCNGC	3 cut(s)	780, 1068, 1316
Sau3AI	GATC	8 cut(s)	211, 241, 355, 415, 534, 618, 820, 1190
Sau96I	GGNCC	2 cut(s)	137, 655
ScrFI	CCNGG	4 cut(s)	314, 434, 597, 1268
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	8 cut(s)	254, 297, 465, 508, 792, 1016, 1117, 1430
SsiI	CCGC	3 cut(s)	52, 96, 782
SspI	AATATT	1 cut(s)	1152
SspMI	CTAG	1 cut(s)	882
StyD4I	CCNGG	4 cut(s)	312, 432, 595, 1266
StyI	CCWWGG	2 cut(s)	934, 1094
TaaI	ACNGT	2 cut(s)	578, 1388
TaiI	ACGT	3 cut(s)	956, 1228, 1263
TaqI	TCGA	6 cut(s)	168, 295, 471, 621, 956, 1329
TasI	AATT	8 cut(s)	254, 297, 465, 508, 792, 1016, 1117, 1430
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	178, 261, 1101
Tru1I	TTAA	5 cut(s)	15, 24, 363, 542, 1391
Tru9I	TTAA	5 cut(s)	15, 24, 363, 542, 1391
TscAI	CASTG	3 cut(s)	536, 581, 1165
TseFI	GTSAC	2 cut(s)	43, 1397
TseI	GCWGC	3 cut(s)	779, 1067, 1315
Tsp45I	GTSAC	2 cut(s)	43, 1397
TspDTI	ATGAA	8 cut(s)	138, 345, 561, 1193, 1194, 1414, 1442, 1461
TspGWI	ACGGA	1 cut(s)	1296
TspRI	CASTG	3 cut(s)	536, 581, 1165
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	297, 1430
XmiI	GTMKAC	1 cut(s)	1374
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.