Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009195

Physical Location & Seq

Genomic Coordinates Forward (+)

84407404 .. 84410716

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG535000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTCTCCGGTTAGGCATCCGTTCCCTTATCTTTGGCCTCCTACTTGTTCTTAGCAGTACAGGGACAAGTAGTCATAGTAGCAGAAAAGCTGCCCCCCAAAAGAAGTCACGTAACTCTACTTCCTTCAGCCGCAGCACATTTCCGGCAGGTTTTATATTCGGGACAGCTTCCGCGGCTTACCAGTTCGAAGGGGCTGCAAAAGAAGGTGGTAGAGGACCGTGTGTATGGGACGCCTTTACTCACAAGTATCCAGATATTGCTGAACAGGCAAAACAGAAGGGTTTGATAGGGATAACGGTAAACACAGGATGGTTTGTGCCATATTCCGACTCAAAGCGTGACCAAGATGCTGCACAACGAGCAATGGATTTCAACCTCGGATGGGCTGGCGTTAAGGTAAAGGGTTACTTTGCATGGTCATTCCTTGATAACTTCGAGTGGGCTGATGGCTACACTGTTAGATTTGGCATCGTCTATGTGGATTTCAAAAATGGGCTCAAAAGACACCCTAAAGCCTCAGCAAACTGGTTCAAGAATTTTCTTAAAAAGTCTAAACAATCAGGAAAGAGGACCTCTCACAAGTCTGAATCACTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

200

Amino Acids

22.18

Weight (kDa)

10.1

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	45 - 87	1.2e-12	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	131 - 185	1.9e-18	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36890 AT5G36890
fragaria_vesca	FvH4_2g00020 FvH4_2g00020 FvH4_2g00020
malus_domestica	MD00G1016800.v1.1 MD02G1137800.v1.1
prunus_persica	Prupe.6G366100_v2.0.a1 Prupe.6G366200_v2.0.a1
pyrus_communis	pycom02g10910 pycom17g24000
rosa_chinensis	RchiOBHm_Chr6g0249281
rosa_laevigata	RLG00000015597
rosa_multiflora	Rmu_sc0004832.1_g000009
rosa_roxburghii	Rroxscaffold_7G00217940
rosa_rugosa	Rorug05G0489800 Rorug05G0489900
rosa_samantha	Rh5BG535000 Rh6AG000800 Rh6BG009300 Rh6CG000100
rosa_wichuraiana	Rw6G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	133, 174, 176
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	376, 490, 535
AhdI	GACNNNNNGTC	1 cut(s)	72
AhlI	ACTAGT	1 cut(s)	595
AluBI	AGCT	2 cut(s)	92, 170
AluI	AGCT	2 cut(s)	92, 170
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	4 cut(s)	92, 135, 197, 353
ApoI	RAATTY	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	218, 573
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	218, 573
BanII	GRGCYC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbvCI	CCTCAGC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	79, 147, 184, 340
BccI	CCATC	3 cut(s)	306, 378, 443
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciVI	GTATCC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	6 cut(s)	93, 133, 136, 177, 198, 354
BlsI	GCNGC	6 cut(s)	94, 134, 137, 178, 199, 355
Bme18I	GGWCC	2 cut(s)	218, 573
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	218, 573
BmsI	GCATC	3 cut(s)	27, 340, 480
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
Bpu10I	CCTNAGC	1 cut(s)	520
Bpu14I	TTCGAA	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	174, 379
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	184, 533
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	174, 379
BseGI	GGATG	3 cut(s)	18, 317, 389
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	184, 533
BseXI	GCAGC	4 cut(s)	79, 147, 184, 340
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	10, 146
BslFI	GGGAC	3 cut(s)	79, 178, 245
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	3 cut(s)	79, 178, 245
BsnI	GGCC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	133, 174, 176
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	184, 533
BssECI	CCNNGG	2 cut(s)	174, 379
BssNI	GRCGYC	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	222, 301, 460
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	53, 520
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	18, 317, 389
BstFNI	CGCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 269, 362
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	79, 147, 184, 340
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	18, 317, 389
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	218, 573
Cfr42I	CCGCGG	1 cut(s)	177
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	53, 520
DriI	GACNNNNNGTC	1 cut(s)	72
Eam1105I	GACNNNNNGTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	218, 573
Eco57I	CTGAAG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	1 cut(s)	420
FaiI	YATR	7 cut(s)	78, 158, 229, 325, 418, 480, 601
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	3 cut(s)	79, 178, 245
FatI	CATG	1 cut(s)	416
Fnu4HI	GCNGC	6 cut(s)	93, 133, 136, 177, 198, 354
FokI	GGATG	3 cut(s)	5, 324, 396
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	6 cut(s)	93, 133, 136, 177, 198, 354
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	6 cut(s)	93, 133, 136, 177, 198, 354
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	10, 146
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	420
HinfI	GANTC	2 cut(s)	332, 590
HpaII	CCGG	2 cut(s)	10, 146
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	331, 383, 589
Hpy188III	TCNNGA	4 cut(s)	163, 254, 535, 564
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	4 cut(s)	136, 185, 200, 274
HpyCH4III	ACNGT	3 cut(s)	222, 301, 460
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	200, 356, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 269, 362
HpyF3I	CTNAG	2 cut(s)	53, 520
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	420
KspI	CCGCGG	1 cut(s)	177
Lsp1109I	GCAGC	4 cut(s)	79, 147, 184, 340
LweI	GCATC	3 cut(s)	27, 340, 480
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	4 cut(s)	108, 113, 341, 407
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	6 cut(s)	50, 209, 389, 529, 564, 586
MseI	TTAA	2 cut(s)	396, 546
MslI	CAYNNNNRTG	1 cut(s)	598
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	10, 146
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	176, 269, 362
NlaIII	CATG	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	108, 341
NspV	TTCGAA	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	6 cut(s)	94, 134, 137, 178, 199, 355
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	218, 573
PspPPI	RGGWCCY	1 cut(s)	573
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	598
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	396, 546
SatI	GCNGC	6 cut(s)	93, 133, 136, 177, 198, 354
Sau96I	GGNCC	2 cut(s)	218, 573
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	8 cut(s)	94, 115, 154, 172, 211, 381, 402, 578
SfaNI	GCATC	3 cut(s)	27, 340, 480
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	218, 573
SmiMI	CAYNNNNRTG	1 cut(s)	598
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	3 cut(s)	133, 174, 176
SspMI	CTAG	1 cut(s)	596
TaaI	ACNGT	3 cut(s)	222, 301, 460
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	189, 438
TasI	AATT	1 cut(s)	538
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	2 cut(s)	135, 179
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	2 cut(s)	396, 546
Tru9I	TTAA	2 cut(s)	396, 546
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	2 cut(s)	108, 341
TseI	GCWGC	4 cut(s)	92, 135, 197, 353
Tsp45I	GTSAC	2 cut(s)	108, 341
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	218, 573
XapI	RAATTY	1 cut(s)	538
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.