Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009195

Physical Location & Seq

Genomic Coordinates Reverse (-)

11535794 .. 11542287

Gene Structure 6494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1137800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTACTCAGCAATTTTATTTATTGTTTGTTTGTAGAGGGAGCCTGCAAGGACGGTGGTAGGGGTCCCAGCATTTGGGATGCCTTTTCACATTCAAAAGGGAATATCATTGATGGAAGCAATGGGGATGTTGCAGTTGATCAATATCATCGGTATAAGGAAGATGTTGAACTCATTGCCAAGTTGGGATTTGAAGCTCATCGTTTTTCCATATCATGGTCTCGAATCTTCCCTGGTATGCTACCTTTTGCCATCTATAGAGTTCTTTCTAGTGCTAAAACGCAGGATATTATCAATTCACTGTCCTCTGGTTTTATAGAATACTTCTCAGTCTATGCAGACACCTGCTTTGCAAGCTTTGGCGATAGAGTGAAGGACTGGATCACTTTTAATGAGCCTTATCAGACTGCTATTAACGGTTATGGTGTTGGGAGATTTGCTCCTGGAAGGCATGAATGCACGTCAACAGAACCATTTTGGGTTGCACACCACCAACTATTGGCACATGCTGCTGCTGTTTCCATATACCGAAGCAAGTATAAGGACAAGCAAGGGGGACAAGTTGGCTTGGTCGTAGACTGTGAATGGGCAGAGGCTAATTCAGACACAATTGAAGATAAAGTTGCTGCAGCAAGGCGCCTAGATTTTCAGCTTGGGTGGTACTTAGATCCAATATATCATGGGGAATACCCCAAAGTTATGCGTGAAAGACTTGGAGATCGGCTTCCCATATTTTCAGAGAAAGATAAGGAGTTGCTTAAGAACTCAGTAGACTTTATTGGTCTGAATCACTATGCATCGAGATTTATTGCACATGGAAGAGATAACCATGATAAGGGTGATTTTTATAAAGCACAAGGGATAGAGAAAATTGAATGGCTGTATGTTGTTCCTTGGGGCATGCATAAGGTTCTGAATTACAAAGCGCAGAGATACAATAATCCCCCAATATATGTTACTGAGAATGGTATGGATGACGAAGATAATGACACCTCCCCACTTCATGAAATGCTGGATGACAAACTGAGAGTTAGTTACTTTAAGAGATACCTTTCAGCAGTTGCCAAAGCGATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008422 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009866 GO:0009873 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015926 GO:0016787 GO:0016798 GO:0019748 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042594 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0080134 GO:0097366 GO:0098542 GO:1901135 GO:1901657 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

360

Amino Acids

41.07

Weight (kDa)

6.12

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	12 - 78	2.3e-27	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	105 - 358	1.3e-64	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36890 AT5G36890
fragaria_vesca	FvH4_2g00020 FvH4_2g00020 FvH4_2g00020
malus_domestica	MD00G1016800.v1.1 MD02G1137800.v1.1
prunus_persica	Prupe.6G366100_v2.0.a1 Prupe.6G366200_v2.0.a1
pyrus_communis	pycom02g10910 pycom17g24000
rosa_chinensis	RchiOBHm_Chr6g0249281
rosa_laevigata	RLG00000015597
rosa_multiflora	Rmu_sc0004832.1_g000009
rosa_roxburghii	Rroxscaffold_7G00217940
rosa_rugosa	Rorug05G0489800 Rorug05G0489900
rosa_samantha	Rh5BG535000 Rh6AG000800 Rh6BG009300 Rh6CG000100
rosa_wichuraiana	Rw6G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	636
AccB7I	CCANNNNNTGG	3 cut(s)	75, 216, 499
AccI	GTMKAC	2 cut(s)	576, 771
AclWI	GGATC	2 cut(s)	389, 662
AcyI	GRCGYC	1 cut(s)	637
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	4 cut(s)	75, 216, 499, 835
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	5 cut(s)	96, 170, 194, 614, 875
AjiI	CACGTC	1 cut(s)	462
AjnI	CCWGG	2 cut(s)	232, 442
AluBI	AGCT	3 cut(s)	197, 357, 652
AluI	AGCT	3 cut(s)	197, 357, 652
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	389, 662
ApeKI	GCWGC	4 cut(s)	509, 512, 626, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	2 cut(s)	639, 928
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	636
BbvI	GCAGC	4 cut(s)	496, 499, 613, 641
BccI	CCATC	2 cut(s)	107, 260
BciT130I	CCWGG	2 cut(s)	234, 444
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	270, 641
BfmI	CTRYAG	2 cut(s)	256, 627
BfoI	RGCGCY	1 cut(s)	640
BfrI	CTTAAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	4 cut(s)	510, 513, 627, 630
BlsI	GCNGC	4 cut(s)	511, 514, 628, 631
Bme1390I	CCNGG	2 cut(s)	234, 444
Bme18I	GGWCC	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	4 cut(s)	43, 66, 67, 638
BmrFI	CCNGG	2 cut(s)	234, 444
BmsI	GCATC	2 cut(s)	70, 806
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BsaBI	GATNNNNATC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	232, 893
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 216, 499, 835
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	2 cut(s)	127, 174
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	234, 444
BseDI	CCNNGG	2 cut(s)	232, 893
BseGI	GGATG	4 cut(s)	85, 133, 979, 1021
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	4 cut(s)	75, 216, 499, 835
BseMI	GCAATG	2 cut(s)	127, 174
BseMII	CTCAG	5 cut(s)	22, 342, 780, 951, 1016
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	496, 499, 613, 641
BseYI	CCCAGC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	636
BslFI	GGGAC	2 cut(s)	51, 570
BslI	CCNNNNNNNGG	4 cut(s)	75, 216, 499, 835
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	51, 570
BsmI	GAATGC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	139, 381, 667, 718
BspCNI	CTCAG	5 cut(s)	21, 341, 779, 952, 1017
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	4 cut(s)	43, 66, 67, 638
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	389, 662
BspT107I	GGYRCC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	2 cut(s)	127, 174
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	232, 893
BssMI	GATC	4 cut(s)	139, 381, 667, 718
BssNI	GRCGYC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	2 cut(s)	234, 444
Bst4CI	ACNGT	4 cut(s)	56, 303, 419, 581
Bst6I	CTCTTC	1 cut(s)	814
BstACI	GRCGYC	1 cut(s)	637
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	46, 355, 902
BstDEI	CTNAG	6 cut(s)	8, 328, 664, 766, 960, 1025
BstF5I	GGATG	4 cut(s)	85, 133, 979, 1021
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	2 cut(s)	639, 928
BstKTI	GATC	4 cut(s)	142, 384, 670, 721
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	4 cut(s)	139, 381, 667, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 509
BstNI	CCWGG	2 cut(s)	234, 444
BstNSI	RCATGY	2 cut(s)	509, 904
BstSCI	CCNGG	2 cut(s)	232, 442
BstSFI	CTRYAG	2 cut(s)	256, 627
BstV1I	GCAGC	4 cut(s)	496, 499, 613, 641
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BtrI	CACGTC	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	85, 133, 979, 1021
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	46, 355, 902
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	2 cut(s)	639, 928
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	8 cut(s)	216, 452, 506, 680, 815, 830, 901, 1004
CviJI	RGCY	9 cut(s)	44, 197, 357, 397, 567, 596, 652, 724, 880
CviKI_1	RGCY	9 cut(s)	44, 197, 357, 397, 567, 596, 652, 724, 880
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	6 cut(s)	8, 328, 664, 766, 960, 1025
DinI	GGCGCC	1 cut(s)	638
DpnI	GATC	4 cut(s)	141, 383, 669, 720
DpnII	GATC	4 cut(s)	139, 381, 667, 718
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	232, 442
EcoT14I	CCWWGG	1 cut(s)	893
EcoT22I	ATGCAT	2 cut(s)	799, 906
EgeI	GGCGCC	1 cut(s)	638
EheI	GGCGCC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	893
FaeI	CATG	8 cut(s)	219, 455, 509, 683, 818, 833, 904, 1007
FaqI	GGGAC	2 cut(s)	51, 570
FatI	CATG	8 cut(s)	215, 451, 505, 679, 814, 829, 900, 1003
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	576, 771
Fnu4HI	GCNGC	4 cut(s)	510, 513, 627, 630
FokI	GGATG	4 cut(s)	92, 140, 986, 1028
Fsp4HI	GCNGC	4 cut(s)	510, 513, 627, 630
FspBI	CTAG	2 cut(s)	270, 641
GlaI	GCGC	2 cut(s)	638, 927
GluI	GCNGC	4 cut(s)	510, 513, 627, 630
GsaI	CCCAGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	640
HhaI	GCGC	2 cut(s)	639, 928
Hin1I	GRCGYC	1 cut(s)	637
Hin1II	CATG	8 cut(s)	219, 455, 509, 683, 818, 833, 904, 1007
Hin6I	GCGC	2 cut(s)	637, 926
HinP1I	GCGC	2 cut(s)	637, 926
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	2 cut(s)	225, 787
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	3 cut(s)	465, 577, 772
Hpy188I	TCNGA	5 cut(s)	405, 604, 739, 786, 915
Hpy188III	TCNNGA	3 cut(s)	222, 801, 1004
Hpy8I	GTNNAC	3 cut(s)	465, 577, 772
HpyAV	CCTTC	2 cut(s)	367, 441
HpyCH4III	ACNGT	4 cut(s)	56, 303, 419, 581
HpyCH4IV	ACGT	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 509
HpyF3I	CTNAG	6 cut(s)	8, 328, 664, 766, 960, 1025
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	637
Hsp92II	CATG	8 cut(s)	219, 455, 509, 683, 818, 833, 904, 1007
HspAI	GCGC	2 cut(s)	637, 926
KasI	GGCGCC	1 cut(s)	636
KflI	GGGWCCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	139, 381, 667, 718
LmnI	GCTCC	2 cut(s)	41, 445
Lsp1109I	GCAGC	4 cut(s)	496, 499, 613, 641
LweI	GCATC	2 cut(s)	70, 806
MaeI	CTAG	2 cut(s)	270, 641
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	3, 955, 1034
MalI	GATC	4 cut(s)	141, 383, 669, 720
MboI	GATC	4 cut(s)	139, 381, 667, 718
MboII	GAAGA	5 cut(s)	173, 220, 626, 831, 992
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	6 cut(s)	13, 295, 598, 609, 870, 916
Mly113I	GGCGCC	1 cut(s)	637
MnlI	CCTC	4 cut(s)	31, 316, 586, 1003
Mph1103I	ATGCAT	2 cut(s)	799, 906
MseI	TTAA	4 cut(s)	390, 414, 759, 1041
MspCI	CTTAAG	1 cut(s)	758
MspR9I	CCNGG	2 cut(s)	234, 444
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	234, 444
MwoI	GCNNNNNNNGC	2 cut(s)	354, 509
NarI	GGCGCC	1 cut(s)	637
NdeII	GATC	4 cut(s)	139, 381, 667, 718
NlaIII	CATG	8 cut(s)	219, 455, 509, 683, 818, 833, 904, 1007
NlaIV	GGNNCC	4 cut(s)	43, 66, 67, 638
NsiI	ATGCAT	2 cut(s)	799, 906
NspI	RCATGY	2 cut(s)	509, 904
PaeI	GCATGC	1 cut(s)	904
PagI	TCATGA	1 cut(s)	1003
PaqCI	CACCTGC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	225, 787
PflMI	CCANNNNNTGG	3 cut(s)	75, 216, 499
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	511, 514, 628, 631
PluTI	GGCGCC	1 cut(s)	640
PpuMI	RGGWCCY	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	232, 442
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	232, 442
PspN4I	GGNNCC	4 cut(s)	43, 66, 67, 638
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
SaqAI	TTAA	4 cut(s)	390, 414, 759, 1041
SatI	GCNGC	4 cut(s)	510, 513, 627, 630
Sau3AI	GATC	4 cut(s)	139, 381, 667, 718
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	234, 444
SfaNI	GCATC	2 cut(s)	70, 806
SfcI	CTRYAG	2 cut(s)	256, 627
SfoI	GGCGCC	1 cut(s)	638
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SphI	GCATGC	1 cut(s)	904
Sse9I	AATT	6 cut(s)	13, 295, 598, 609, 870, 916
SspDI	GGCGCC	1 cut(s)	636
SspMI	CTAG	2 cut(s)	270, 641
StyD4I	CCNGG	2 cut(s)	232, 442
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	4 cut(s)	56, 303, 419, 581
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	223, 800
TasI	AATT	6 cut(s)	13, 295, 598, 609, 870, 916
TfiI	GAWTC	2 cut(s)	225, 787
Tru1I	TTAA	4 cut(s)	390, 414, 759, 1041
Tru9I	TTAA	4 cut(s)	390, 414, 759, 1041
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	4 cut(s)	509, 512, 626, 629
TspDTI	ATGAA	3 cut(s)	468, 992, 1020
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	3 cut(s)	75, 216, 499
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	65
XceI	RCATGY	2 cut(s)	509, 904
XmiI	GTMKAC	2 cut(s)	576, 771
XspI	CTAG	2 cut(s)	270, 641
Zsp2I	ATGCAT	2 cut(s)	799, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.