Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0020567

Physical Location & Seq

Genomic Coordinates Forward (+)

59370188 .. 59371946

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTCTCCTTAGGCAGGGTGTTCATTAAGGTCAAGATCATGCTTGACTGGGATCCCAATGGCAAGCAAGGACCCATGACTCCTCTACCTGATCTTGTTACAATCCACCAACCAAAGGATGATGAATTGATGAGTTTGTCAGGCGGGCACAAGAAATTGAAGCAGCACCTATTTTGGTCCCAACTGATATTGAGATATTGGTGTCTGAAAGAAGCTTTTGTCAAAGCAATTGGGAGTGGACTGGCATATGATTTGGACAAAGTGGAATTTCATCACAGTTGCTGGGCAAACATTTCTGTTAACATTGAGGGCAAGGCTACGAGAGAGTGGCGCTTTTGGCTTCTAGAGTTGGGAAAGAATCATTTGAGTTGTTTCATACTTGATACATTATTTAATATTTATGCTGGAGGTGTATTCCTTGTAACCATTCATTCCCCTCCTGACTATCCTTTCAAACCACCTAAGCTGCTAGTGCTTGTTTCCTTCAGTATTGTTTGTGATCGGCTTTCCTTTCCTTCAGCTTATTTAATCACTTTAAAGGAGTCAATCATTAAGGAGATAACTGAAAACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

191

Amino Acids

21.9

Weight (kDa)

8.3

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACPS	PF01648	54 - 119	1.6e-10	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020567)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0276121
rosa_multiflora	Rmu_sc0027894.1_g000001
rosa_rugosa	Rorug05G0489800
rosa_samantha	Rh1CG318200 Rh2BG423500 Rh6AG118200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	47, 60
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	469, 501
AfiI	CCNNNNNNNGG	2 cut(s)	15, 115
AgsI	TTSAA	2 cut(s)	160, 454
AluBI	AGCT	3 cut(s)	215, 466, 521
AluI	AGCT	3 cut(s)	215, 466, 521
AlwI	GGATC	2 cut(s)	47, 60
AlwNI	CAGNNNCTG	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	163, 466
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	71, 177
AvaII	GGWCC	2 cut(s)	71, 177
AxyI	CCTNAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	175, 453
BfaI	CTAG	2 cut(s)	344, 470
BfoI	RGCGCY	1 cut(s)	334
BisI	GCNGC	2 cut(s)	164, 467
BlsI	GCNGC	2 cut(s)	165, 468
Bme18I	GGWCC	2 cut(s)	71, 177
BmgT120I	GGNCC	2 cut(s)	71, 177
BmiI	GGNNCC	3 cut(s)	54, 73, 179
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 115
Bse1I	ACTGG	2 cut(s)	53, 246
Bse21I	CCTNAGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	15, 115
BseNI	ACTGG	2 cut(s)	53, 246
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	175, 453
BseYI	CCCAGC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	15, 115
BsmFI	GGGAC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	36, 52, 91, 499
BspACI	CCGC	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	54, 73, 179
BspPI	GGATC	2 cut(s)	47, 60
BsrI	ACTGG	2 cut(s)	53, 246
BssMI	GATC	4 cut(s)	36, 52, 91, 499
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	65, 146
BstDEI	CTNAG	2 cut(s)	10, 462
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	4 cut(s)	39, 55, 94, 502
BstMBI	GATC	4 cut(s)	36, 52, 91, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 472
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	175, 453
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	65, 146
CaiI	CAGNNNCTG	1 cut(s)	282
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	71, 177
CviAII	CATG	2 cut(s)	40, 76
CviJI	RGCY	6 cut(s)	215, 317, 340, 466, 505, 521
CviKI_1	RGCY	6 cut(s)	215, 317, 340, 466, 505, 521
DdeI	CTNAG	2 cut(s)	10, 462
DpnI	GATC	4 cut(s)	38, 54, 93, 501
DpnII	GATC	4 cut(s)	36, 52, 91, 499
DraI	TTTAAA	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	71, 177
Eco57I	CTGAAG	2 cut(s)	469, 501
Eco81I	CCTNAGG	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	71
FaeI	CATG	2 cut(s)	43, 79
FaiI	YATR	6 cut(s)	41, 77, 247, 249, 377, 402
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	39, 75
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	164, 467
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	164, 467
FspBI	CTAG	2 cut(s)	344, 470
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	164, 467
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	334
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	43, 79
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	3 cut(s)	79, 358, 542
HpaI	GTTAAC	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	239, 301
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	34, 344, 440
Hpy8I	GTNNAC	2 cut(s)	239, 301
HpyAV	CCTTC	2 cut(s)	493, 525
HpyCH4III	ACNGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 472
HpyF3I	CTNAG	2 cut(s)	10, 462
Hsp92II	CATG	2 cut(s)	43, 79
HspAI	GCGC	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	36, 52, 91, 499
LpnPI	CCDG	7 cut(s)	34, 102, 126, 227, 268, 390, 453
Lsp1109I	GCAGC	2 cut(s)	175, 453
MaeI	CTAG	2 cut(s)	344, 470
MaeIII	GTNAC	2 cut(s)	97, 421
MalI	GATC	4 cut(s)	38, 54, 93, 501
MboI	GATC	4 cut(s)	36, 52, 91, 499
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	4 cut(s)	125, 155, 228, 266
MlyI	GAGTC	2 cut(s)	73, 551
MnlI	CCTC	4 cut(s)	93, 301, 401, 447
MseI	TTAA	7 cut(s)	27, 300, 393, 527, 536, 552, 574
MunI	CAATTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	337, 472
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	4 cut(s)	36, 52, 91, 499
NlaIII	CATG	2 cut(s)	43, 79
NlaIV	GGNNCC	3 cut(s)	54, 73, 179
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	165, 468
PleI	GAGTC	2 cut(s)	73, 550
PpsI	GAGTC	2 cut(s)	73, 550
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	54, 73, 179
PspPI	GGNCC	2 cut(s)	71, 177
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	7 cut(s)	27, 300, 393, 527, 536, 552, 574
SatI	GCNGC	2 cut(s)	164, 467
Sau3AI	GATC	4 cut(s)	36, 52, 91, 499
Sau96I	GGNCC	2 cut(s)	71, 177
SchI	GAGTC	2 cut(s)	73, 551
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	8 cut(s)	33, 91, 171, 217, 412, 463, 468, 523
SinI	GGWCC	2 cut(s)	71, 177
Sse9I	AATT	4 cut(s)	125, 155, 228, 266
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	344, 470
TaaI	ACNGT	1 cut(s)	278
TasI	AATT	4 cut(s)	125, 155, 228, 266
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	7 cut(s)	27, 300, 393, 527, 536, 552, 574
Tru9I	TTAA	7 cut(s)	27, 300, 393, 527, 536, 552, 574
TseI	GCWGC	2 cut(s)	163, 466
TspDTI	ATGAA	5 cut(s)	13, 138, 260, 364, 419
VpaK11BI	GGWCC	2 cut(s)	71, 177
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	343
XspI	CTAG	2 cut(s)	344, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.