Rh6AG118200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020567
Physical Location & Seq
Forward (+)
17783610 .. 17788983
5374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG118200.1

Sequence Viewer

Length: 633 bp
ATGTTCTCCTTAGGCAGGGTGTTCATTAAGGTCAAGATCATGCTTGACTGGGATCCCAATGGCAAGCAAGGACCCGTGACTCCTCTACCTGATCTTGTTACAATCCACCAACCAAAGGATGATGAATTGATGAGTTTGTCAGGCGGGCACCAGAAATTGAAGCAGCACCTATTTTGGTCCCAACTGATATTGAGAGGAGGAGGTTGGAAGGTGAAAGATGAGGGAGAGATATCAAGAGGTTGTGGCAGAGTAAGGGGCTGTCGTGGTGGTGGCTGCGGCTCTGGGTTATTCACAGCTGGACCATATTCGTTGGAGAAAACAGGGACATGTAACTATGGTACAGTGCTAAAGCATCCTTCTGGCTGTGCCAAGATTGTACATGTTAGTGGCAAAGGATGGGGCTGGTTTGCCACCTTTCTAATAATGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGAAACTTGTGCACTGGAGAACAAATTTCTGTCAGGCTCAAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

210

Amino Acids

23.22

Weight (kDa)

9.17

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020567)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0276121
rosa_multiflora Rmu_sc0027894.1_g000001
rosa_rugosa Rorug05G0489800
rosa_samantha Rh1CG318200 Rh2BG423500 Rh6AG118200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 2 cut(s) 144, 276
AclWI GGATC 2 cut(s) 47, 60
AcsI RAATTY 2 cut(s) 569, 608
AfaI GTAC 2 cut(s) 340, 378
AfiI CCNNNNNNNGG 2 cut(s) 15, 115
AflIII ACRYGT 2 cut(s) 326, 379
AgsI TTSAA 2 cut(s) 160, 517
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 598
Alw44I GTGCAC 1 cut(s) 594
AlwI GGATC 2 cut(s) 47, 60
Ama87I CYCGRG 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 163, 273
ApoI RAATTY 2 cut(s) 569, 608
AspS9I GGNCC 3 cut(s) 71, 177, 299
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 3 cut(s) 71, 177, 299
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 2 cut(s) 150, 598
BamHI GGATCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 175, 260
BccI CCATC 2 cut(s) 390, 425
BfaI CTAG 1 cut(s) 551
BisI GCNGC 3 cut(s) 164, 274, 277
BlsI GCNGC 3 cut(s) 165, 275, 278
Bme18I GGWCC 3 cut(s) 71, 177, 299
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 3 cut(s) 71, 177, 299
BmiI GGNNCC 4 cut(s) 54, 73, 149, 179
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 607
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 115
Bse1I ACTGG 3 cut(s) 53, 538, 603
Bse21I CCTNAGG 1 cut(s) 10
BseGI GGATG 3 cut(s) 124, 352, 401
BseLI CCNNNNNNNGG 2 cut(s) 15, 115
BseNI ACTGG 3 cut(s) 53, 538, 603
BseRI GAGGAG 3 cut(s) 72, 210, 213
BseSI GKGCMC 2 cut(s) 150, 598
BseXI GCAGC 2 cut(s) 175, 260
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 163, 337
BslI CCNNNNNNNGG 2 cut(s) 15, 115
BsmFI GGGAC 2 cut(s) 163, 337
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 150, 598
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 36, 52, 91
BspACI CCGC 2 cut(s) 144, 276
BspLI GGNNCC 4 cut(s) 54, 73, 149, 179
BspPI GGATC 2 cut(s) 47, 60
BspT107I GGYRCC 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 3 cut(s) 53, 538, 603
BssMI GATC 3 cut(s) 36, 52, 91
Bst4CI ACNGT 2 cut(s) 343, 475
BstAUI TGTACA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 65, 146
BstDEI CTNAG 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 13
BstF5I GGATG 3 cut(s) 124, 352, 401
BstKTI GATC 3 cut(s) 39, 55, 94
BstMBI GATC 3 cut(s) 36, 52, 91
BstNSI RCATGY 2 cut(s) 330, 383
BstSLI GKGCMC 2 cut(s) 150, 598
BstV1I GCAGC 2 cut(s) 175, 260
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 124, 352, 401
BtsIMutI CAGTG 3 cut(s) 348, 545, 596
Cac8I GCNNGC 2 cut(s) 65, 146
Cfr13I GGNCC 3 cut(s) 71, 177, 299
Csp6I GTAC 2 cut(s) 339, 377
CviAII CATG 3 cut(s) 40, 327, 380
CviJI RGCY 7 cut(s) 258, 273, 279, 296, 363, 402, 621
CviKI_1 RGCY 7 cut(s) 258, 273, 279, 296, 363, 402, 621
CviQI GTAC 2 cut(s) 339, 377
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 38, 54, 93
DpnII GATC 3 cut(s) 36, 52, 91
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 71, 177, 299
Eco81I CCTNAGG 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 71
EcoRV GATATC 1 cut(s) 231
FaeI CATG 3 cut(s) 43, 330, 383
FaiI YATR 9 cut(s) 41, 304, 328, 336, 381, 429, 453, 460, 584
FaqI GGGAC 2 cut(s) 163, 337
FatI CATG 3 cut(s) 39, 326, 379
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 164, 274, 277
FokI GGATG 3 cut(s) 131, 339, 408
Fsp4HI GCNGC 3 cut(s) 164, 274, 277
FspBI CTAG 1 cut(s) 551
GluI GCNGC 3 cut(s) 164, 274, 277
GsuI CTGGAG 1 cut(s) 620
Hin1II CATG 3 cut(s) 43, 330, 383
HinfI GANTC 2 cut(s) 79, 482
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 3 cut(s) 34, 234, 563
Hpy8I GTNNAC 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 202, 366
HpyCH4III ACNGT 2 cut(s) 343, 475
HpyCH4V TGCA 1 cut(s) 596
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 3 cut(s) 43, 330, 383
Kzo9I GATC 3 cut(s) 36, 52, 91
Lsp1109I GCAGC 2 cut(s) 175, 260
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 551
MaeIII GTNAC 4 cut(s) 76, 97, 329, 469
MalI GATC 3 cut(s) 38, 54, 93
MboI GATC 3 cut(s) 36, 52, 91
MboII GAAGA 1 cut(s) 499
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 150, 598
MluCI AATT 4 cut(s) 125, 155, 569, 608
MlyI GAGTC 2 cut(s) 73, 491
MmeI TCCRAC 2 cut(s) 185, 291
MnlI CCTC 7 cut(s) 93, 188, 191, 194, 214, 230, 559
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 296
NdeII GATC 3 cut(s) 36, 52, 91
NlaIII CATG 3 cut(s) 43, 330, 383
NlaIV GGNNCC 4 cut(s) 54, 73, 149, 179
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 330, 383
PaeR7I CTCGAG 1 cut(s) 563
PciI ACATGT 2 cut(s) 326, 379
PkrI GCNGC 3 cut(s) 165, 275, 278
PleI GAGTC 2 cut(s) 73, 490
PpsI GAGTC 2 cut(s) 73, 490
PpuMI RGGWCCY 1 cut(s) 71
PscI ACATGT 2 cut(s) 326, 379
Psp5II RGGWCCY 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 54, 73, 149, 179
PspPI GGNCC 3 cut(s) 71, 177, 299
PspPPI RGGWCCY 1 cut(s) 71
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 340, 378
RsaNI GTAC 2 cut(s) 339, 377
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 164, 274, 277
Sau3AI GATC 3 cut(s) 36, 52, 91
Sau96I GGNCC 3 cut(s) 71, 177, 299
SchI GAGTC 2 cut(s) 73, 491
SduI GDGCHC 2 cut(s) 150, 598
SfaNI GCATC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 3 cut(s) 71, 177, 299
SlaI CTCGAG 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 563, 622
SmoI CTYRAG 2 cut(s) 563, 622
Sse9I AATT 4 cut(s) 125, 155, 569, 608
SsiI CCGC 2 cut(s) 144, 276
SspMI CTAG 1 cut(s) 551
TaaI ACNGT 2 cut(s) 343, 475
TaqI TCGA 2 cut(s) 485, 564
TasI AATT 4 cut(s) 125, 155, 569, 608
TatI WGTACW 1 cut(s) 376
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 3 cut(s) 348, 545, 603
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 163, 273
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 13, 138
TspRI CASTG 3 cut(s) 348, 545, 603
VneI GTGCAC 1 cut(s) 594
VpaK11BI GGWCC 3 cut(s) 71, 177, 299
XagI CCTNNNNNAGG 1 cut(s) 13
XapI RAATTY 2 cut(s) 569, 608
XceI RCATGY 2 cut(s) 330, 383
XhoI CTCGAG 1 cut(s) 563
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.