RchiOBHm_Chr6g0277421

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017984
Physical Location & Seq
Forward (+)
39894002 .. 39895045
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGAATATTCCCAAGCTCATGTTCAGACTAGTCTTTGGAAATGTCATCGCTACGTTCTTCTTCTTTTGGTCGCCAATGAGTAAAGTAAAACAAATCATAAAGAACAAGTTTACAGAGCAGCTCTCAAGCATTTCGTACCAGATCACTTTTTTCAAGCGCCTCCTTTCTGCTTGGTATCGCTTGCCCTATGTGTCACCAAACAACATTTTCATATCAAGCATCAATGGCATTGGTGCAGCTATTGAAGCCATGAACCTGCTCATCCTCATGATGTTTGCCCCGAAGAGTGAGAAGGAACAACTTCTTGAATTGCTCCCGTTTGTATTCTCGTTTAAGCACGATGAGAAATCCAAAGAATTATCTAAACCACACTAA

Protein Analysis

124

Amino Acids

14.49

Weight (kDa)

9.82

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 14 - 96 7.2e-09 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017984)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14850
malus_domestica MD05G1012300.v1.1
prunus_persica Prupe.8G017500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0277421
rosa_laevigata RLG00000013304
rosa_roxburghii Rroxscaffold_7G00191350
rosa_samantha Rh6AG218800 Rh6BG222700 Rh6CG225300 Rh6DG215600
rosa_wichuraiana Rw6G019170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 3 cut(s) 154, 245, 308
AhlI ACTAGT 1 cut(s) 28
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 16, 121, 239
AluI AGCT 3 cut(s) 16, 121, 239
ApeKI GCWGC 2 cut(s) 118, 236
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 186
BbvI GCAGC 2 cut(s) 130, 248
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 2 cut(s) 119, 237
BlsI GCNGC 2 cut(s) 120, 238
BmsI GCATC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpuEI CTTGAG 1 cut(s) 109
BseGI GGATG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 130, 248
BsgI GTGCAG 1 cut(s) 255
Bsp143I GATC 1 cut(s) 141
BspHI TCATGA 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 264
BssMI GATC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 225, 245
BstV1I GCAGC 2 cut(s) 130, 248
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 19, 250, 268
CviJI RGCY 4 cut(s) 16, 121, 239, 248
CviKI_1 RGCY 4 cut(s) 16, 121, 239, 248
CviQI GTAC 1 cut(s) 136
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
FaeI CATG 3 cut(s) 22, 253, 271
FaiI YATR 6 cut(s) 20, 98, 189, 212, 251, 269
FatI CATG 3 cut(s) 18, 249, 267
Fnu4HI GCNGC 2 cut(s) 119, 237
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 119, 237
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 158
GluI GCNGC 2 cut(s) 119, 237
HaeII RGCGCY 1 cut(s) 160
HhaI GCGC 1 cut(s) 159
Hin1II CATG 3 cut(s) 22, 253, 271
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 268, 305
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 245
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 3 cut(s) 22, 253, 271
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 2 cut(s) 152, 269
Lsp1109I GCAGC 2 cut(s) 130, 248
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 49, 52, 295
MluCI AATT 2 cut(s) 308, 356
MnlI CCTC 2 cut(s) 170, 275
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 225, 245
NdeII GATC 1 cut(s) 141
NlaIII CATG 3 cut(s) 22, 253, 271
NmuCI GTSAC 1 cut(s) 192
PagI TCATGA 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 300
PkrI GCNGC 2 cut(s) 120, 238
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 119, 237
Sau3AI GATC 1 cut(s) 141
SetI ASST 5 cut(s) 18, 56, 123, 241, 258
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 2 cut(s) 308, 356
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 29
TaiI ACGT 1 cut(s) 56
TasI AATT 2 cut(s) 308, 356
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 2 cut(s) 118, 236
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 3 cut(s) 17, 199, 266
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.