RchiOBHm_Chr6g0299081

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
60313389 .. 60314300
912 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGGCGAATCAGCAACCGCCATCTCTACGGCCATGGTTTCTCGAGGCAGTGCCATTCATCGTGCTTCTCCTAATAGCAGCTCATGTCCTCGCTTTGGTCTATTGGATATACAGATTAGCTACTGAGAAAGAGAAACAACCCCAGAGGAGAAAAGCACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.25

Weight (kDa)

10.16

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018759)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10745 AT5G10745 AT5G10745
malus_domestica MD08G1050300.v1.1 MD15G1044500.v1.1
prunus_persica Prupe.1G398400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0299081
rosa_roxburghii Rroxscaffold_7G00169020
rosa_wichuraiana Rw6G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 80, 119
AluI AGCT 2 cut(s) 80, 119
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 41
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CviAII CATG 2 cut(s) 33, 83
CviJI RGCY 3 cut(s) 31, 80, 119
CviKI_1 RGCY 3 cut(s) 31, 80, 119
DdeI CTNAG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 2 cut(s) 36, 86
FaiI YATR 3 cut(s) 34, 84, 109
FatI CATG 2 cut(s) 32, 82
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 2 cut(s) 36, 86
HinfI GANTC 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 36, 86
LpnPI CCDG 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 89
MnlI CCTC 3 cut(s) 37, 98, 138
NcoI CCATGG 1 cut(s) 32
NlaIII CATG 2 cut(s) 36, 86
PaeR7I CTCGAG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 79
SatI GCNGC 1 cut(s) 78
SetI ASST 2 cut(s) 82, 121
Sfr274I CTCGAG 1 cut(s) 41
SgeI CNNG 7 cut(s) 45, 53, 55, 73, 95, 101, 154
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 1 cut(s) 17
StyI CCWWGG 1 cut(s) 32
TaqI TCGA 1 cut(s) 42
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.