Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018389

Physical Location & Seq

Genomic Coordinates Reverse (-)

61263632 .. 61264579

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTAGTACAATTTGTCCGACGTTTCTCAAAGATGAGTTTGCCCACCAAAATCAAGCCATTGCTATTTCTTTGGTGTCATCTACTTATCTGCACATTCCTTTTCACTTCCCTCCCCCTCGCTATGGGCACTGCTTCGGATGATTATACATCCTTGGTTTTCAATGGGTGTTCAAAACAAATGTTCCCAAACAATGTCTACCCGGAAAACCTCAAACCCCTCATGAACTCGTTGGTCTCAAACTCTTCACTAGAGACTTTCTTGGCAGCCACAGCCACCTCTGGCGATGGCACTAACGGCATTAACGGTCTGTACCAGTGCCGCGGAGACCTCTCCCCCGCCGAGTGCAACACCTGCATAAGAAAGATTCCACCTTTAGTCAGCCAACTCTGTGGAGAAACCAATGTAGCAGTCCGAGTCCAGCTCCGCGGGTGCTACTTACGTTATGAGATTGCTGACTCAAAGCCATTTGATGCAACAGAATTTCTTTTCAAACGTTGTGAAGTTAATCAAGCAAGGGCTGCTGGGCTTGGGGAGAAAAGGGACACGGCTTTCGGCATATTGGAAAACGATGTCAAGAATAGTACTGGTGGAGTTGGTGGCTTCTACACCGGTGGCTATGACACAGTGAATATTTCAGGACAATGCGAAGGTACCTTAGTGAACCAGGATTGTGTGGCTTGCCTGCAAAGTGCTTCTCAGAAGGCCAAGACCGAGTGTGGCGATTCCGTTACGGGGCAGATTTATCTCTACAAGTGCTCCATTAGCTACAAGTCTACAAACTCCTCGAATGCCAATGCCAATGGTGTGCCATATTCGCGTAAAGTCGGTGCAGGCTCTGGGAATTATCCAGCAGAGATGGTAGTGGCTATTATTGTGGGAAGTATTATAGGTTTGATATTATTAGGTGCTGTTGTCATTTACATTATAAAAGAGTGCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

315

Amino Acids

33.94

Weight (kDa)

8.3

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	57 - 150	2.7e-15	Salt stress response/antifungal
Stress-antifung	PF01657	202 - 259	1.8e-06	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40340
rosa_chinensis	RchiOBHm_Chr6g0300411
rosa_laevigata	RLG00000011340
rosa_multiflora	Rmu_sc0001670.1_g000006
rosa_rugosa	Rorug06G0295800
rosa_samantha	Rh6AG408500 Rh6BG415800 Rh6CG423200 Rh6DG408800
rosa_wichuraiana	Rw6G035730

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	929
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
Acc65I	GGTACC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	2 cut(s)	198, 776
AccII	CGCG	3 cut(s)	324, 429, 820
AciI	CCGC	5 cut(s)	322, 324, 339, 427, 429
AclI	AACGTT	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	4 cut(s)	9, 314, 586, 655
AfiI	CCNNNNNNNGG	2 cut(s)	124, 735
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	3 cut(s)	163, 174, 493
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	2 cut(s)	424, 768
AluI	AGCT	2 cut(s)	424, 768
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	3 cut(s)	241, 248, 321
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	266, 521
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AsiGI	ACCGGT	1 cut(s)	611
Asp718I	GGTACC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	645, 678
BanI	GGYRCC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	278, 508
BccI	CCATC	2 cut(s)	281, 853
BceAI	ACGGC	2 cut(s)	313, 564
BciT130I	CCWGG	1 cut(s)	668
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	241, 248, 321
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	3 cut(s)	267, 322, 522
BlsI	GCNGC	3 cut(s)	268, 323, 523
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	2 cut(s)	203, 668
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	2 cut(s)	203, 668
BmsI	GCATC	1 cut(s)	463
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpuMI	CCSGG	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	241, 321
BsaJI	CCNNGG	3 cut(s)	153, 322, 427
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 735
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	316, 592
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	3 cut(s)	153, 322, 427
BseGI	GGATG	2 cut(s)	145, 149
BseLI	CCNNNNNNNGG	2 cut(s)	124, 735
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	2 cut(s)	316, 592
BseRI	GAGGAG	1 cut(s)	775
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	278, 508
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	2 cut(s)	76, 852
Bsh1236I	CGCG	3 cut(s)	324, 429, 820
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	653
BshTI	ACCGGT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	761
BsiSI	CCGG	2 cut(s)	203, 612
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	124, 735
BsmAI	GTCTC	3 cut(s)	241, 248, 321
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	707
Bso31I	GGTCTC	2 cut(s)	241, 321
Bsp1286I	GDGCHC	2 cut(s)	131, 761
Bsp143I	GATC	1 cut(s)	941
BspACI	CCGC	5 cut(s)	322, 324, 339, 427, 429
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	3 cut(s)	324, 429, 820
BspHI	TCATGA	2 cut(s)	222, 944
BspLI	GGNNCC	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	653
BspTNI	GGTCTC	2 cut(s)	241, 321
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	316, 592
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	3 cut(s)	153, 322, 427
BssMI	GATC	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	2 cut(s)	308, 628
Bst6I	CTCTTC	1 cut(s)	250
BstAPI	GCANNNNNTGC	2 cut(s)	354, 521
BstC8I	GCNNGC	3 cut(s)	682, 686, 835
BstDEI	CTNAG	2 cut(s)	658, 699
BstDSI	CCRYGG	2 cut(s)	322, 427
BstF5I	GGATG	2 cut(s)	145, 149
BstFNI	CGCG	3 cut(s)	324, 429, 820
BstKTI	GATC	1 cut(s)	944
BstMAI	GTCTC	3 cut(s)	241, 248, 321
BstMBI	GATC	1 cut(s)	941
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 297, 354, 521, 765, 817
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	201, 666
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	3 cut(s)	324, 429, 820
BstV1I	GCAGC	2 cut(s)	278, 508
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	707
BtgI	CCRYGG	2 cut(s)	322, 427
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	145, 149
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	129, 323, 633
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	682, 686, 835
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	2 cut(s)	222, 944
Cfr10I	RCCGGY	1 cut(s)	611
Cfr42I	CCGCGG	2 cut(s)	325, 430
Csp6I	GTAC	4 cut(s)	8, 313, 585, 654
CspAI	ACCGGT	1 cut(s)	611
CviAII	CATG	2 cut(s)	223, 945
CviQI	GTAC	4 cut(s)	8, 313, 585, 654
DdeI	CTNAG	2 cut(s)	658, 699
DpnI	GATC	1 cut(s)	943
DpnII	GATC	1 cut(s)	941
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	241, 321
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	226, 948
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	222, 944
FauI	CCCGC	2 cut(s)	346, 422
FblI	GTMKAC	2 cut(s)	198, 776
Fnu4HI	GCNGC	3 cut(s)	267, 322, 522
FokI	GGATG	2 cut(s)	136, 152
Fsp4HI	GCNGC	3 cut(s)	267, 322, 522
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	3 cut(s)	267, 322, 522
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	2 cut(s)	203, 612
Hin1II	CATG	2 cut(s)	226, 948
HinfI	GANTC	4 cut(s)	367, 417, 458, 725
HpaII	CCGG	2 cut(s)	203, 612
Hpy166II	GTNNAC	3 cut(s)	199, 664, 777
Hpy188I	TCNGA	4 cut(s)	20, 139, 416, 702
Hpy188III	TCNNGA	4 cut(s)	223, 577, 639, 945
Hpy8I	GTNNAC	3 cut(s)	199, 664, 777
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	644, 697
HpyCH4III	ACNGT	2 cut(s)	308, 628
HpyCH4IV	ACGT	3 cut(s)	22, 442, 496
HpyCH4V	TGCA	7 cut(s)	93, 348, 357, 476, 688, 833, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 297, 354, 521, 765, 817
HpyF3I	CTNAG	2 cut(s)	658, 699
HpySE526I	ACGT	3 cut(s)	22, 442, 496
Hsp92II	CATG	2 cut(s)	226, 948
KpnI	GGTACC	1 cut(s)	657
KspI	CCGCGG	2 cut(s)	325, 430
Kzo9I	GATC	1 cut(s)	941
LmnI	GCTCC	2 cut(s)	429, 764
Lsp1109I	GCAGC	2 cut(s)	278, 508
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	3 cut(s)	22, 442, 496
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	1 cut(s)	943
MboI	GATC	1 cut(s)	941
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	131, 761
MluCI	AATT	3 cut(s)	11, 482, 844
MlyI	GAGTC	2 cut(s)	426, 452
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	7 cut(s)	122, 128, 221, 230, 289, 341, 796
MseI	TTAA	2 cut(s)	303, 507
MspA1I	CMGCKG	2 cut(s)	324, 429
MspI	CCGG	2 cut(s)	203, 612
MspR9I	CCNGG	2 cut(s)	203, 668
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	3 cut(s)	324, 429, 820
MwoI	GCNNNNNNNGC	6 cut(s)	272, 297, 354, 521, 765, 817
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	941
NlaIII	CATG	2 cut(s)	226, 948
NlaIV	GGNNCC	1 cut(s)	655
NmeAIII	GCCGAG	1 cut(s)	367
PagI	TCATGA	2 cut(s)	222, 944
PaqCI	CACCTGC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	367, 725
PinAI	ACCGGT	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	268, 323, 523
PleI	GAGTC	2 cut(s)	425, 452
PpsI	GAGTC	2 cut(s)	425, 452
PsiI	TTATAA	1 cut(s)	929
Psp1406I	AACGTT	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	839
RsaI	GTAC	4 cut(s)	9, 314, 586, 655
RsaNI	GTAC	4 cut(s)	8, 313, 585, 654
SacII	CCGCGG	2 cut(s)	325, 430
SaqAI	TTAA	2 cut(s)	303, 507
SatI	GCNGC	3 cut(s)	267, 322, 522
Sau3AI	GATC	1 cut(s)	941
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	2 cut(s)	426, 452
ScrFI	CCNGG	2 cut(s)	203, 668
SduI	GDGCHC	2 cut(s)	131, 761
SfaNI	GCATC	1 cut(s)	463
Sfr303I	CCGCGG	2 cut(s)	325, 430
SgrAI	CRCCGGYG	1 cut(s)	611
SgrBI	CCGCGG	2 cut(s)	325, 430
Sse9I	AATT	3 cut(s)	11, 482, 844
SsiI	CCGC	5 cut(s)	322, 324, 339, 427, 429
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	201, 666
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	308, 628
TaiI	ACGT	3 cut(s)	25, 445, 499
TaqI	TCGA	1 cut(s)	788
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	3 cut(s)	11, 482, 844
TatI	WGTACW	2 cut(s)	7, 584
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	367, 725
Tru1I	TTAA	2 cut(s)	303, 507
Tru9I	TTAA	2 cut(s)	303, 507
TscAI	CASTG	3 cut(s)	136, 323, 633
TseI	GCWGC	2 cut(s)	266, 521
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	3 cut(s)	136, 323, 633
XapI	RAATTY	1 cut(s)	482
XmiI	GTMKAC	2 cut(s)	198, 776
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.