RchiOBHm_Chr6g0305161

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016773
Physical Location & Seq
Forward (+)
64238824 .. 64240020
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGCAGTGGCTCAATGAACAAGTGATTGTAGGCTCAGTGATTTATGTCTCATTTGGAACCCAAGCTGGCTTATTAGAGAATCAACTTAATGAGGTGATTTTGGGGTTGGAGCAGGCAGGGGTTCCATTTGTCTTGGTGGTCATGCGATTGAACACATGGTCTCCACCAAACGGACTAGAAGAGAAACTAAAAGGTAAAAGCATTGTTACAAAGGAATGGGTGGATCAACACCAAATACTATCACACCGAGCAGTGGGAGGGTTTATGAGTCACTGTGGTTGGAACTCAGTGATCGAAAGCATCTCCGCCGGCGTGCCCATTTTGGCCTGGCCTATGTTTGCCGAGCAGTGTCTCAATGCCAAGCTTGTTGTTGAAGGACTCGGGGCCGGACTCGAAATCAAAAAAGTGCCTGATCAATTAGGCTTAGGAATTGAAGTCTTAAAACAGGCAATATGTGCAGGCGTGAGAGAGCTAATGTTGGGAAGCGAGAAAGGAAGGAATGCAAAGAAGAGAGCACAAGCCTTGGGAAGATTGGCTTGTCATGCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

183

Amino Acids

19.82

Weight (kDa)

7.7

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 13 - 132 2.1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36640
malus_domestica MD15G1106200.v1.1
prunus_persica Prupe.1G458200_v2.0.a1 Prupe.1G458400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0305151 RchiOBHm_Chr6g0305161
rosa_laevigata RLG00000010913
rosa_multiflora Rmu_sc0000061.1_g000018
rosa_roxburghii Rroxscaffold_7G00163100
rosa_rugosa Rorug06G0338300
rosa_samantha Rh6AG449800 Rh6CG463200 Rh6DG450400
rosa_wichuraiana Rw6G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 170, 253
AgsI TTSAA 3 cut(s) 151, 374, 434
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 65, 364, 472
AluI AGCT 3 cut(s) 65, 364, 472
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 3 cut(s) 52, 165, 356
AlwI GGATC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 324, 329, 384
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 52, 165, 356
BfaI CTAG 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 3 cut(s) 58, 123, 385
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 253
Bse118I RCCGGY 1 cut(s) 308
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 170, 253
BseMII CTCAG 2 cut(s) 48, 300
BseSI GKGCMC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 3 cut(s) 326, 331, 386
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 309, 387
BslI CCNNNNNNNGG 2 cut(s) 170, 253
BsmAI GTCTC 3 cut(s) 52, 165, 356
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 326, 331, 386
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 318, 517
Bsp143I GATC 3 cut(s) 223, 291, 412
BspACI CCGC 1 cut(s) 306
BspANI GGCC 3 cut(s) 326, 331, 386
BspCNI CTCAG 2 cut(s) 47, 299
BspLI GGNNCC 3 cut(s) 58, 123, 385
BspPI GGATC 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 3 cut(s) 223, 291, 412
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 174, 503
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 67, 114, 310, 314, 460
BstDEI CTNAG 3 cut(s) 34, 286, 424
BstKTI GATC 3 cut(s) 226, 294, 415
BstMAI GTCTC 3 cut(s) 52, 165, 356
BstMBI GATC 3 cut(s) 223, 291, 412
BstMWI GCNNNNNNNGC 2 cut(s) 455, 542
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 326, 331, 386
BtsI GCAGTG 3 cut(s) 11, 258, 353
BtsIMutI CAGTG 6 cut(s) 11, 42, 258, 271, 294, 353
Cac8I GCNNGC 5 cut(s) 67, 114, 310, 314, 460
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 384
CviAII CATG 3 cut(s) 142, 156, 542
DdeI CTNAG 3 cut(s) 34, 286, 424
DpnI GATC 3 cut(s) 225, 293, 414
DpnII GATC 3 cut(s) 223, 291, 412
Eam1104I CTCTTC 2 cut(s) 174, 503
EarI CTCTTC 2 cut(s) 174, 503
EciI GGCGGA 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 522
Eco31I GGTCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 3 cut(s) 145, 159, 545
FaiI YATR 7 cut(s) 45, 143, 157, 266, 335, 454, 543
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FatI CATG 3 cut(s) 141, 155, 541
FbaI TGATCA 1 cut(s) 412
FspBI CTAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 326, 331, 386
HapII CCGG 2 cut(s) 309, 387
Hin1II CATG 3 cut(s) 145, 159, 545
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 4 cut(s) 79, 268, 378, 390
HpaII CCGG 2 cut(s) 309, 387
HphI GGTGA 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 368, 489
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 4, 458, 503, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 542
HpyF3I CTNAG 3 cut(s) 34, 286, 424
Hsp92II CATG 3 cut(s) 145, 159, 545
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 223, 291, 412
LmnI GCTCC 1 cut(s) 109
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 205, 269
MalI GATC 3 cut(s) 225, 293, 414
MboI GATC 3 cut(s) 223, 291, 412
MboII GAAGA 3 cut(s) 191, 520, 540
MhlI GDGCHC 2 cut(s) 318, 517
MluCI AATT 2 cut(s) 416, 429
MlyI GAGTC 3 cut(s) 277, 372, 384
MmeI TCCRAC 2 cut(s) 87, 260
MnlI CCTC 2 cut(s) 85, 251
MreI CGCCGGCG 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 3 cut(s) 87, 440, 550
MspI CCGG 2 cut(s) 309, 387
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 455, 542
NaeI GCCGGC 1 cut(s) 310
NdeII GATC 3 cut(s) 223, 291, 412
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 3 cut(s) 145, 159, 545
NlaIV GGNNCC 3 cut(s) 58, 123, 385
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 269
PctI GAATGC 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 3 cut(s) 276, 372, 384
PpsI GAGTC 3 cut(s) 276, 372, 384
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 58, 123, 385
PspPI GGNCC 1 cut(s) 384
SaqAI TTAA 3 cut(s) 87, 440, 550
Sau3AI GATC 3 cut(s) 223, 291, 412
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 3 cut(s) 277, 372, 384
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 2 cut(s) 318, 517
SetI ASST 5 cut(s) 67, 96, 196, 366, 474
SfaNI GCATC 1 cut(s) 309
SgrAI CRCCGGYG 1 cut(s) 308
Sse9I AATT 2 cut(s) 416, 429
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 294, 393
TasI AATT 2 cut(s) 416, 429
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 3 cut(s) 87, 440, 550
Tru9I TTAA 3 cut(s) 87, 440, 550
TscAI CASTG 5 cut(s) 42, 258, 278, 294, 353
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 5 cut(s) 42, 258, 278, 294, 353
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.