RchiOBHm_Chr5g0018221

CRAL/TRIO, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021438
Physical Location & Seq
Forward (+)
12721498 .. 12721707
210 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGGAAGTGAATTACAAGGAGAGTTTGTTCCTAGTGATGAAGGGTCATACACCATTATTGTTCAGAAGAAGAAGAAGATCGGAGCTAATGAAGGACCTATTCGCAACACTTTCCGAAGCAATGAGCCAGGAAAGGTTGTCCAGACAATCGAGAACACGTCGAGCAAGAAGAGGGTGCTGTACCGGCACAAGTCCAACAAGTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

69

Amino Acids

7.79

Weight (kDa)

9.78

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 6 - 58 6e-20 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021438)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0018221
rosa_multiflora Rmu_sc0006581.1_g000001 Rmu_sc0018521.1_g000001
rosa_samantha Rh5AG134000 Rh5BG132500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 156
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse118I RCCGGY 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 184
Bsp143I GATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssMI GATC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 164
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BtrI CACGTC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 2 cut(s) 86, 127
CviKI_1 RGCY 2 cut(s) 86, 127
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 127
FaiI YATR 1 cut(s) 49
FspBI CTAG 1 cut(s) 33
HapII CCGG 1 cut(s) 184
HpaII CCGG 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 66, 83, 116
Hpy188III TCNNGA 2 cut(s) 142, 151
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 35, 86
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 158
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 114, 141, 155, 197
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 158
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 5 cut(s) 79, 82, 85, 88, 181
MluCI AATT 1 cut(s) 11
MnlI CCTC 1 cut(s) 165
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 129
SetI ASST 4 cut(s) 88, 100, 138, 161
SinI GGWCC 1 cut(s) 95
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 150, 161
TasI AATT 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 54, 105
VpaK11BI GGWCC 1 cut(s) 95
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.