CRAL/TRIO, N-terminal domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0018221 |
| rosa_multiflora | Rmu_sc0006581.1_g000001 Rmu_sc0018521.1_g000001 |
| rosa_samantha | Rh5AG134000 Rh5BG132500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 157 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AflIII | ACRYGT | 1 cut(s) | 309 |
| AgeI | ACCGGT | 1 cut(s) | 58 |
| AgsI | TTSAA | 1 cut(s) | 79 |
| AjiI | CACGTC | 1 cut(s) | 312 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 5 cut(s) | 28, 47, 133, 179, 239 |
| AluI | AGCT | 5 cut(s) | 28, 47, 133, 179, 239 |
| AlwI | GGATC | 1 cut(s) | 157 |
| AoxI | GGCC | 2 cut(s) | 144, 248 |
| ApeKI | GCWGC | 1 cut(s) | 201 |
| AsiGI | ACCGGT | 1 cut(s) | 58 |
| AspS9I | GGNCC | 1 cut(s) | 248 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 59, 91 |
| BbvCI | CCTCAGC | 1 cut(s) | 48 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BccI | CCATC | 1 cut(s) | 110 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BisI | GCNGC | 1 cut(s) | 202 |
| BlsI | GCNGC | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 1 cut(s) | 282 |
| BmgBI | CACGTC | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 1 cut(s) | 248 |
| BmrFI | CCNGG | 1 cut(s) | 282 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 89, 121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 1 cut(s) | 125 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| Bse3DI | GCAATG | 1 cut(s) | 280 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseMI | GCAATG | 1 cut(s) | 280 |
| BseMII | CTCAG | 2 cut(s) | 39, 120 |
| BseRI | GAGGAG | 2 cut(s) | 65, 97 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 2 cut(s) | 146, 250 |
| BshTI | ACCGGT | 1 cut(s) | 58 |
| BsiSI | CCGG | 2 cut(s) | 59, 147 |
| BsnI | GGCC | 2 cut(s) | 146, 250 |
| Bsp1407I | TGTACA | 1 cut(s) | 36 |
| Bsp143I | GATC | 2 cut(s) | 149, 231 |
| BspANI | GGCC | 2 cut(s) | 146, 250 |
| BspCNI | CTCAG | 2 cut(s) | 40, 121 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 280 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BsrGI | TGTACA | 1 cut(s) | 36 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssMI | GATC | 2 cut(s) | 149, 231 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst6I | CTCTTC | 1 cut(s) | 320 |
| BstAUI | TGTACA | 1 cut(s) | 36 |
| BstDEI | CTNAG | 2 cut(s) | 48, 129 |
| BstKTI | GATC | 2 cut(s) | 152, 234 |
| BstMBI | GATC | 2 cut(s) | 149, 231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 340 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstSCI | CCNGG | 1 cut(s) | 280 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BsuRI | GGCC | 2 cut(s) | 146, 250 |
| BtrI | CACGTC | 1 cut(s) | 312 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CspAI | ACCGGT | 1 cut(s) | 58 |
| CviJI | RGCY | 9 cut(s) | 28, 47, 75, 133, 146, 179, 239, 250, 280 |
| CviKI_1 | RGCY | 9 cut(s) | 28, 47, 75, 133, 146, 179, 239, 250, 280 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 2 cut(s) | 48, 129 |
| DpnI | GATC | 2 cut(s) | 151, 233 |
| DpnII | GATC | 2 cut(s) | 149, 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 320 |
| EarI | CTCTTC | 1 cut(s) | 320 |
| EcoO109I | RGGNCCY | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| FaiI | YATR | 2 cut(s) | 69, 164 |
| Fnu4HI | GCNGC | 1 cut(s) | 202 |
| Fsp4HI | GCNGC | 1 cut(s) | 202 |
| GluI | GCNGC | 1 cut(s) | 202 |
| HaeIII | GGCC | 2 cut(s) | 146, 250 |
| HapII | CCGG | 2 cut(s) | 59, 147 |
| HpaII | CCGG | 2 cut(s) | 59, 147 |
| Hpy188I | TCNGA | 4 cut(s) | 112, 130, 236, 269 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 295, 304 |
| Hpy99I | CGWCG | 2 cut(s) | 116, 316 |
| HpyAV | CCTTC | 1 cut(s) | 239 |
| HpyCH4IV | ACGT | 1 cut(s) | 311 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 340 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 129 |
| HpySE526I | ACGT | 1 cut(s) | 311 |
| Kzo9I | GATC | 2 cut(s) | 149, 231 |
| LmnI | GCTCC | 1 cut(s) | 236 |
| LpnPI | CCDG | 6 cut(s) | 57, 72, 160, 267, 294, 308 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| MaeII | ACGT | 1 cut(s) | 311 |
| MalI | GATC | 2 cut(s) | 151, 233 |
| MboI | GATC | 2 cut(s) | 149, 231 |
| MboII | GAAGA | 6 cut(s) | 94, 235, 238, 241, 334, 337 |
| MluCI | AATT | 1 cut(s) | 135 |
| MmeI | TCCRAC | 1 cut(s) | 135 |
| MnlI | CCTC | 3 cut(s) | 43, 118, 321 |
| MseI | TTAA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 1 cut(s) | 47 |
| MspI | CCGG | 2 cut(s) | 59, 147 |
| MspR9I | CCNGG | 1 cut(s) | 282 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 340 |
| NdeII | GATC | 2 cut(s) | 149, 231 |
| PinAI | ACCGGT | 1 cut(s) | 58 |
| PkrI | GCNGC | 1 cut(s) | 203 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspPI | GGNCC | 1 cut(s) | 248 |
| PvuII | CAGCTG | 1 cut(s) | 47 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 1 cut(s) | 202 |
| Sau3AI | GATC | 2 cut(s) | 149, 231 |
| Sau96I | GGNCC | 1 cut(s) | 248 |
| ScrFI | CCNGG | 1 cut(s) | 282 |
| SetI | ASST | 7 cut(s) | 30, 49, 135, 181, 241, 291, 314 |
| SmlI | CTYRAG | 1 cut(s) | 140 |
| SmoI | CTYRAG | 1 cut(s) | 140 |
| Sse9I | AATT | 1 cut(s) | 135 |
| SspI | AATATT | 1 cut(s) | 19 |
| StyD4I | CCNGG | 1 cut(s) | 280 |
| TaiI | ACGT | 1 cut(s) | 314 |
| TaqI | TCGA | 3 cut(s) | 31, 303, 314 |
| TasI | AATT | 1 cut(s) | 135 |
| TatI | WGTACW | 1 cut(s) | 36 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseI | GCWGC | 1 cut(s) | 201 |
| TspDTI | ATGAA | 1 cut(s) | 258 |