Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006581.1

Orthogroup ID

OG0021438

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 478 bp

tccattcttgactcaaagaaccaagagcaagtttgtggtggctcgccccgctaaggtcaccgagacccttctcaagtacattccagctgaggagataccggttcagtatggtggcttcaagagagaaaatgacaccgagttcttctcctccgaagatggttctgtttctgagataactctcaaggccggatcaacccaaaccatagagattgatctagctgaggttgataatagcacattggtttgggatgtgagtgttttgggatgggaagtgaattacaaggaggagtttgttcctagtgatgaagggtcatacaccattattgttcagaagaagaagaagatcggagctcatgaagggcctattcgcaacactttccgaagcaatgagcctggaaaggttgtcctgacaatcgagaacacttcgagcaagaagaagagggtgctgtaccggcacaagtccaacaagtgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

158

Amino Acids

17.89

Weight (kDa)

8.68

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021438)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0018221
rosa_multiflora	Rmu_sc0006581.1_g000001 Rmu_sc0018521.1_g000001
rosa_samantha	Rh5AG134000 Rh5BG132500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	78, 450
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	87, 219, 351
AluI	AGCT	3 cut(s)	87, 219, 351
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	184, 360
AsiGI	ACCGGT	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
Bbv12I	GWGCWC	1 cut(s)	353
BbvCI	CCTCAGC	2 cut(s)	88, 220
BccI	CCATC	2 cut(s)	150, 259
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	216, 298
Bme1390I	CCNGG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
Bpu10I	CCTNAGC	3 cut(s)	52, 88, 220
BpuEI	CTTGAG	2 cut(s)	57, 165
BsaI	GGTCTC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	2 cut(s)	98, 451
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	254, 270
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	79, 160, 211
BseRI	GAGGAG	3 cut(s)	105, 137, 300
BshFI	GGCC	2 cut(s)	186, 362
BshTI	ACCGGT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	99, 187, 452
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	186, 362
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	189, 212, 343
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	186, 362
BspCNI	CTCAG	3 cut(s)	80, 161, 212
BspHI	TCATGA	1 cut(s)	353
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	392
BsrFI	RCCGGY	2 cut(s)	98, 451
BssAI	RCCGGY	2 cut(s)	98, 451
BssMI	GATC	3 cut(s)	189, 212, 343
Bst2UI	CCWGG	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	4 cut(s)	52, 88, 169, 220
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	254, 270
BstKTI	GATC	3 cut(s)	192, 215, 346
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	189, 212, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 452
BstNI	CCWGG	1 cut(s)	394
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	186, 362
BtsCI	GGATG	2 cut(s)	254, 270
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	353
Cfr10I	RCCGGY	2 cut(s)	98, 451
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	77, 449
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	8 cut(s)	42, 87, 115, 186, 219, 351, 362, 392
CviKI_1	RGCY	8 cut(s)	42, 87, 115, 186, 219, 351, 362, 392
CviQI	GTAC	2 cut(s)	77, 449
DdeI	CTNAG	4 cut(s)	52, 88, 169, 220
DpnI	GATC	3 cut(s)	191, 214, 345
DpnII	GATC	3 cut(s)	189, 212, 343
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	1 cut(s)	357
FaiI	YATR	4 cut(s)	109, 204, 314, 355
FatI	CATG	1 cut(s)	353
FauI	CCCGC	1 cut(s)	56
FokI	GGATG	2 cut(s)	261, 277
FriOI	GRGCYC	1 cut(s)	353
FspBI	CTAG	2 cut(s)	216, 298
HaeIII	GGCC	2 cut(s)	186, 362
HapII	CCGG	3 cut(s)	99, 187, 452
Hin1II	CATG	1 cut(s)	357
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	3 cut(s)	99, 187, 452
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	5 cut(s)	152, 170, 331, 348, 381
Hpy188III	TCNNGA	5 cut(s)	8, 119, 354, 407, 416
HpyAV	CCTTC	3 cut(s)	78, 300, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 452
HpyF3I	CTNAG	4 cut(s)	52, 88, 169, 220
Hsp92II	CATG	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	189, 212, 343
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	7 cut(s)	97, 112, 200, 379, 406, 420, 465
MaeI	CTAG	2 cut(s)	216, 298
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	191, 214, 345
MboI	GATC	3 cut(s)	189, 212, 343
MboII	GAAGA	8 cut(s)	134, 165, 344, 347, 350, 353, 446, 449
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	83, 158, 215, 278, 433
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	3 cut(s)	99, 187, 452
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	48, 452
NdeII	GATC	3 cut(s)	189, 212, 343
NlaIII	CATG	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	98
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	392
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	87
RsaI	GTAC	2 cut(s)	78, 450
RsaNI	GTAC	2 cut(s)	77, 449
SacI	GAGCTC	1 cut(s)	353
Sau3AI	GATC	3 cut(s)	189, 212, 343
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	6 cut(s)	58, 89, 221, 226, 353, 403
SmlI	CTYRAG	2 cut(s)	72, 180
SmoI	CTYRAG	2 cut(s)	72, 180
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	216, 298
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	392
TaqI	TCGA	2 cut(s)	415, 426
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	319, 370
XspI	CTAG	2 cut(s)	216, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.