Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021445

Physical Location & Seq

Genomic Coordinates Forward (+)

14242076 .. 14245335

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTTGTGGTTACCGCAATTCTGAGGTTTTTGAAGCCTGGTGGAAGAATTCCCGATAAACGGAAGAATACTCTCTGCGTGAAGAATGTAGATCTTAGTTGTGATGTCATAATGTCGGACACTGCAGGTGTGAAAATTCCGGAGCTTTATTTGGAGCTGGCTAGTGGGAACTATCGAAGGGTTGATCACAAATATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

66

Amino Acids

7.45

Weight (kDa)

9.34

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021445)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0019801
rosa_roxburghii	Rroxscaffold_1G00045520 Rroxscaffold_4G00326140 Rroxscaffold_4G00326150 Rroxscaffold_5G00364970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	48, 135
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	145, 157
AluI	AGCT	2 cut(s)	145, 157
Aor13HI	TCCGGA	1 cut(s)	139
ApoI	RAATTY	2 cut(s)	48, 135
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	91, 184
BspACI	CCGC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	116
BssMI	GATC	2 cut(s)	91, 184
Bst2UI	CCWGG	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	23, 95
BstEII	GGTNACC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	94, 187
BstMBI	GATC	2 cut(s)	91, 184
BstNI	CCWGG	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	159
CviJI	RGCY	4 cut(s)	37, 145, 157, 161
CviKI_1	RGCY	4 cut(s)	37, 145, 157, 161
DdeI	CTNAG	2 cut(s)	23, 95
DpnI	GATC	2 cut(s)	93, 186
DpnII	GATC	2 cut(s)	91, 184
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	37
FaiI	YATR	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	184
FspBI	CTAG	1 cut(s)	162
HapII	CCGG	1 cut(s)	140
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	24, 118
Hpy188III	TCNNGA	2 cut(s)	53, 140
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	23, 95
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	91, 184
LmnI	GCTCC	2 cut(s)	142, 154
LpnPI	CCDG	5 cut(s)	24, 51, 111, 143, 153
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	93, 186
MboI	GATC	2 cut(s)	91, 184
MboII	GAAGA	3 cut(s)	57, 76, 94
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	3 cut(s)	18, 48, 135
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	18
MroI	TCCGGA	1 cut(s)	139
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	91, 184
PaqCI	CACCTGC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	91, 184
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	4 cut(s)	29, 130, 147, 159
SfcI	CTRYAG	1 cut(s)	123
SgeI	CNNG	9 cut(s)	17, 50, 51, 65, 91, 138, 152, 170, 174
Sse9I	AATT	3 cut(s)	18, 48, 135
SsiI	CCGC	1 cut(s)	15
SspI	AATATT	1 cut(s)	194
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	37
TaqI	TCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	18, 48, 135
TscAI	CASTG	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	48, 135
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.