Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0021445

Physical Location & Seq

Genomic Coordinates Reverse (-)

58153842 .. 58154350

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCAACTCGGGTTACGAGCTCGATGAGTGGAAAAGACTCGTGCGAGAGCGGGTCCTCCGACAACGATGAGGGATTGGTGCTTGCTTCGCTTTCAAGCTTGTTTAATGGTGCTAGTTTCGTAGTCAAGAAAAATGACTTGAAGAAGGCGGTTGCGAAATTCGATGCTTGTGGTTACCGCAATTACGAGTTGAAGCACAGTGGAAGACTTCCGGATAAAGGGAAGAAAATTACTCTTTGCGTGAAGAAGGTAGATCTTAGTTGTGTTGTCATAATGTCGGATATTGCAGGTGTGAAAATTCCGGAGCTTTATTTTGGAGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

108

Amino Acids

11.49

Weight (kDa)

8.91

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021445)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0019801
rosa_roxburghii	Rroxscaffold_1G00045520 Rroxscaffold_4G00326140 Rroxscaffold_4G00326150 Rroxscaffold_5G00364970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	51
AccIII	TCCGGA	2 cut(s)	211, 301
AciI	CCGC	4 cut(s)	51, 149, 178, 321
AcsI	RAATTY	2 cut(s)	158, 297
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	96, 142, 193
AluBI	AGCT	3 cut(s)	21, 99, 307
AluI	AGCT	3 cut(s)	21, 99, 307
Alw21I	GWGCWC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	2 cut(s)	211, 301
ApoI	RAATTY	2 cut(s)	158, 297
AspS9I	GGNCC	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	114, 325
BfuAI	ACCTGC	1 cut(s)	278
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	211
BsaWI	WCCGGW	2 cut(s)	211, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseAI	TCCGGA	2 cut(s)	211, 301
BseLI	CCNNNNNNNGG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	212, 302
BslI	CCNNNNNNNGG	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	2 cut(s)	211, 301
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	4 cut(s)	51, 149, 178, 321
BspEI	TCCGGA	2 cut(s)	211, 301
BspLI	GGNNCC	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	51
BssMI	GATC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	257
BstEII	GGTNACC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	54
CviJI	RGCY	4 cut(s)	21, 99, 307, 324
CviKI_1	RGCY	4 cut(s)	21, 99, 307, 324
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	23
FaiI	YATR	1 cut(s)	272
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	114, 325
GluI	GCNGC	1 cut(s)	322
HapII	CCGG	2 cut(s)	212, 302
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	2 cut(s)	212, 302
Hpy188I	TCNGA	2 cut(s)	61, 280
Hpy188III	TCNNGA	3 cut(s)	127, 212, 302
HpyAV	CCTTC	2 cut(s)	139, 241
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	257
Kpn2I	TCCGGA	2 cut(s)	211, 301
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	3 cut(s)	225, 273, 315
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	114, 325
MaeIII	GTNAC	2 cut(s)	13, 173
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	154, 216, 235, 256
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	158, 181, 228, 297
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	84, 258
MnlI	CCTC	3 cut(s)	64, 67, 311
MroI	TCCGGA	2 cut(s)	211, 301
MseI	TTAA	1 cut(s)	105
MspI	CCGG	2 cut(s)	212, 302
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	54
PspPPI	RGGWCCY	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	5 cut(s)	23, 101, 252, 292, 309
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	4 cut(s)	158, 181, 228, 297
SsiI	CCGC	4 cut(s)	51, 149, 178, 321
SspMI	CTAG	2 cut(s)	114, 325
SstI	GAGCTC	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	23, 162
TasI	AATT	4 cut(s)	158, 181, 228, 297
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	205
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	2 cut(s)	158, 297
XspI	CTAG	2 cut(s)	114, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.