Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0021445

Physical Location & Seq

Genomic Coordinates Reverse (-)

58147643 .. 58153406

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTCCTGTTACCCTCAATCCGAGTTGACGGGGCTCACGGATGCGATAAGGAGGCTCTTGTGATACTTGTTAAGGCTGCAACTATTTTGGATGAGATCTTTCACCTGCAAGTGATCAATGTCAAATCGGATGAAGCTTCAAATCCGATTCAACCCATCTCATCTCCACTCCTTGCTTTCCGATCTGCGGCGGTGATCTATACCCACTGCCGGTTTCAGTTCCAAGCACCGACACTAGCATCTTCTCCATCTAAATCTCACCGGTCAAGGCGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

92

Amino Acids

10.15

Weight (kDa)

9.59

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021445)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0019801
rosa_roxburghii	Rroxscaffold_1G00045520 Rroxscaffold_4G00326140 Rroxscaffold_4G00326150 Rroxscaffold_5G00364970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	2 cut(s)	188, 191
AcyI	GRCGYC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	187, 210
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	141, 152
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	77
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	95, 205, 251
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	164, 256
BclI	TGATCA	1 cut(s)	114
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	2 cut(s)	78, 189
BlsI	GCNGC	2 cut(s)	79, 190
BmiI	GGNNCC	1 cut(s)	272
BmsI	GCATC	2 cut(s)	32, 248
BsaHI	GRCGYC	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 210
Bse118I	RCCGGY	3 cut(s)	210, 261, 273
BseGI	GGATG	3 cut(s)	47, 97, 136
BseLI	CCNNNNNNNGG	2 cut(s)	187, 210
BseXI	GCAGC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	211, 262, 274
BslI	CCNNNNNNNGG	2 cut(s)	187, 210
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	96, 114, 182, 195
BspACI	CCGC	2 cut(s)	188, 191
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	270
BsrFI	RCCGGY	3 cut(s)	210, 261, 273
BssAI	RCCGGY	3 cut(s)	210, 261, 273
BssMI	GATC	4 cut(s)	96, 114, 182, 195
BssNI	GRCGYC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	47, 97, 136
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	4 cut(s)	99, 117, 185, 198
BstMBI	GATC	4 cut(s)	96, 114, 182, 195
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	47, 97, 136
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	3 cut(s)	210, 261, 273
CspAI	ACCGGT	1 cut(s)	261
CviJI	RGCY	4 cut(s)	35, 56, 77, 137
CviKI_1	RGCY	4 cut(s)	35, 56, 77, 137
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	4 cut(s)	98, 116, 184, 197
DpnII	GATC	4 cut(s)	96, 114, 182, 195
Eco24I	GRGCYC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	37
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
FaiI	YATR	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	78, 189
FokI	GGATG	3 cut(s)	54, 104, 143
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	78, 189
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	78, 189
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	3 cut(s)	211, 262, 274
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	211, 262, 274
HphI	GGTGA	3 cut(s)	95, 205, 251
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	23, 130, 147, 182
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	80, 109
Hsp92I	GRCGYC	1 cut(s)	271
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	96, 114, 182, 195
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	20, 119, 224, 275
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	32, 248
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	4 cut(s)	98, 116, 184, 197
MboI	GATC	4 cut(s)	96, 114, 182, 195
MboII	GAAGA	1 cut(s)	234
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	25, 46
MseI	TTAA	1 cut(s)	72
MspI	CCGG	3 cut(s)	211, 262, 274
NarI	GGCGCC	1 cut(s)	271
NdeII	GATC	4 cut(s)	96, 114, 182, 195
NlaIV	GGNNCC	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	148
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	79, 190
PluTI	GGCGCC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	78, 189
Sau3AI	GATC	4 cut(s)	96, 114, 182, 195
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	2 cut(s)	108, 139
SfaNI	GCATC	2 cut(s)	32, 248
SfoI	GGCGCC	1 cut(s)	272
SsiI	CCGC	2 cut(s)	188, 191
SspDI	GGCGCC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	236
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	212
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.