Rroxscaffold_5G00364970

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0021445
Physical Location & Seq
Forward (+)
46250857 .. 46253164
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364970.1

Sequence Viewer

Length: 678 bp
ATGAAAAAGCCATGGAAATGGCTGCTGTTTCTTTGTGAGTTGCGAGAGGGAGAAAGGAAAGTGAAGCGAGAAAATGGGAATTTACTTTATCCTTCTTCTTTTGGCATTAGTGCTAATGGAAGGAGGAATGATTGTGTTGGCCTAGTGGCCACTGCTCCCTCGACCGACACACCAACTACAGCAATCAAACAAAAGAAAATGGATGGAAAGAAGAAGAAGGAAGAAAAGAAGAAAAAGATTTTTCGGGGTATTACAGTTGCACCGGGCATGCTAGCTACAAGGACCAAGGATCAATACACTAGCGGTGATCTATACCCACCGCCGTTTCGGTTCCAAGCACCGACACTAGCATCTTCTCCATCTAAATCTCACCGGTCAAGGCGCCGTAGTGTTAGAGTCGAGGCTGGTGAGCGAAGAAGAAGCTTAGGCCATGGCAACTCGGGTTACGAGCTCGATGAGTGGAAAAGACTCGTGCGAGGCAAGTCCTCCGACAACGATGAGGGATTGGTGCTTGCTTCGCTTTCAAGCTTGTTTAATGGTGCTAGTTTCGTAGTCAAGAAAAATGACTTGAAGAAGGCGGAGTACGGTGAAGAGATTGATGTTTCGGCTATGTCGGGTCCCTCTCAAAGCATTCGTCAATGGTGTGAAAATTCCGGAGCTTTATTTGGAGCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mg_trans_NIPA

Protein Analysis

225

Amino Acids

25.02

Weight (kDa)

9.98

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021445)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0019801
rosa_roxburghii Rroxscaffold_1G00045520 Rroxscaffold_4G00326140 Rroxscaffold_4G00326150 Rroxscaffold_5G00364970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 653
AciI CCGC 3 cut(s) 303, 320, 578
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 2 cut(s) 79, 649
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 1 cut(s) 584
AgeI ACCGGT 1 cut(s) 372
AgsI TTSAA 2 cut(s) 525, 571
AluBI AGCT 6 cut(s) 275, 423, 451, 528, 659, 671
AluI AGCT 6 cut(s) 275, 423, 451, 528, 659, 671
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 439
Aor13HI TCCGGA 1 cut(s) 653
AoxI GGCC 3 cut(s) 139, 147, 427
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 79, 649
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
AsiGI ACCGGT 1 cut(s) 372
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 282, 617
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 4 cut(s) 317, 362, 419, 599
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 282, 617
BalI TGGCCA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 566, 598
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 197, 367
BceAI ACGGC 2 cut(s) 307, 369
BcnI CCSGG 1 cut(s) 264
BfaI CTAG 6 cut(s) 143, 272, 300, 347, 543, 676
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 385
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 282, 617
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 282, 617
BmiI GGNNCC 4 cut(s) 332, 383, 618, 619
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 359
BmtI GCTAGC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 11, 285, 430
BsaWI WCCGGW 2 cut(s) 372, 653
Bse118I RCCGGY 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 653
BseDI CCNNGG 3 cut(s) 11, 285, 430
BseGI GGATG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 141, 149, 429
BshNI GGYRCC 1 cut(s) 381
BshTI ACCGGT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 3 cut(s) 263, 373, 654
BslFI GGGAC 1 cut(s) 603
BsmFI GGGAC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 3 cut(s) 141, 149, 429
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 453
Bsp13I TCCGGA 1 cut(s) 653
Bsp143I GATC 2 cut(s) 289, 307
Bsp19I CCATGG 2 cut(s) 11, 430
BspACI CCGC 3 cut(s) 303, 320, 578
BspANI GGCC 3 cut(s) 141, 149, 429
BspEI TCCGGA 1 cut(s) 653
BspLI GGNNCC 4 cut(s) 332, 383, 618, 619
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 11, 285, 430
BssMI GATC 2 cut(s) 289, 307
BssNI GRCGYC 1 cut(s) 382
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 3 cut(s) 11, 285, 430
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 256, 587
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 4 cut(s) 269, 273, 513, 673
BstDEI CTNAG 1 cut(s) 424
BstDSI CCRYGG 2 cut(s) 11, 430
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 292, 310
BstMBI GATC 2 cut(s) 289, 307
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 141, 149, 429
BtgI CCRYGG 2 cut(s) 11, 430
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 4 cut(s) 269, 273, 513, 673
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 2 cut(s) 282, 617
Csp6I GTAC 1 cut(s) 583
CspAI ACCGGT 1 cut(s) 372
CviAII CATG 3 cut(s) 12, 268, 431
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 1 cut(s) 424
DinI GGCGCC 1 cut(s) 383
DpnI GATC 2 cut(s) 291, 309
DpnII GATC 2 cut(s) 289, 307
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 3 cut(s) 11, 285, 430
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 282, 617
Eco53kI GAGCTC 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 617
EcoT14I CCWWGG 3 cut(s) 11, 285, 430
EcoT38I GRGCYC 1 cut(s) 453
EgeI GGCGCC 1 cut(s) 383
EheI GGCGCC 1 cut(s) 383
ErhI CCWWGG 3 cut(s) 11, 285, 430
FaeI CATG 3 cut(s) 15, 271, 434
FaiI YATR 5 cut(s) 13, 269, 313, 432, 611
FaqI GGGAC 1 cut(s) 603
FatI CATG 3 cut(s) 11, 267, 430
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 6 cut(s) 143, 272, 300, 347, 543, 676
GlaI GCGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 3 cut(s) 141, 149, 429
HapII CCGG 3 cut(s) 263, 373, 654
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 3 cut(s) 15, 271, 434
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HindIII AAGCTT 2 cut(s) 421, 526
HinfI GANTC 2 cut(s) 396, 468
HpaII CCGG 3 cut(s) 263, 373, 654
HphI GGTGA 4 cut(s) 317, 362, 419, 599
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 2 cut(s) 556, 654
HpyAV CCTTC 4 cut(s) 102, 114, 211, 568
HpyCH4III ACNGT 2 cut(s) 256, 587
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 1 cut(s) 424
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 3 cut(s) 15, 271, 434
HspAI GCGC 1 cut(s) 382
KasI GGCGCC 1 cut(s) 381
KflI GGGWCCC 1 cut(s) 617
Kpn2I TCCGGA 1 cut(s) 653
Kzo9I GATC 2 cut(s) 289, 307
LmnI GCTCC 3 cut(s) 160, 656, 668
LpnPI CCDG 5 cut(s) 276, 386, 390, 657, 667
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 1 cut(s) 359
MaeI CTAG 6 cut(s) 143, 272, 300, 347, 543, 676
MaeIII GTNAC 1 cut(s) 443
MalI GATC 2 cut(s) 291, 309
MboI GATC 2 cut(s) 289, 307
MhlI GDGCHC 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 79, 649
MluNI TGGCCA 1 cut(s) 149
Mly113I GGCGCC 1 cut(s) 382
MlyI GAGTC 2 cut(s) 405, 462
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 8 cut(s) 40, 117, 169, 394, 470, 493, 496, 631
Mox20I TGGCCA 1 cut(s) 149
MroI TCCGGA 1 cut(s) 653
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 3 cut(s) 263, 373, 654
MspR9I CCNGG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 630
MwoI GCNNNNNNNGC 1 cut(s) 517
NarI GGCGCC 1 cut(s) 382
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 2 cut(s) 11, 430
NdeII GATC 2 cut(s) 289, 307
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 15, 271, 434
NlaIV GGNNCC 4 cut(s) 332, 383, 618, 619
NspI RCATGY 1 cut(s) 271
PaeI GCATGC 1 cut(s) 271
PctI GAATGC 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 372
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 2 cut(s) 404, 462
PluTI GGCGCC 1 cut(s) 385
PpsI GAGTC 2 cut(s) 404, 462
PpuMI RGGWCCY 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 617
PspN4I GGNNCC 4 cut(s) 332, 383, 618, 619
PspPI GGNCC 2 cut(s) 282, 617
PspPPI RGGWCCY 1 cut(s) 617
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 16
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 2 cut(s) 289, 307
Sau96I GGNCC 2 cut(s) 282, 617
SchI GAGTC 2 cut(s) 405, 462
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 453
SetI ASST 6 cut(s) 277, 425, 453, 530, 661, 673
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 383
SinI GGWCC 2 cut(s) 282, 617
SmiMI CAYNNNNRTG 1 cut(s) 16
SphI GCATGC 1 cut(s) 271
Sse9I AATT 2 cut(s) 79, 649
SsiI CCGC 3 cut(s) 303, 320, 578
SspDI GGCGCC 1 cut(s) 381
SspMI CTAG 6 cut(s) 143, 272, 300, 347, 543, 676
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 11, 285, 430
TaaI ACNGT 2 cut(s) 256, 587
TaqI TCGA 3 cut(s) 161, 399, 453
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 79, 649
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 282, 617
XapI RAATTY 2 cut(s) 79, 649
XceI RCATGY 1 cut(s) 271
XspI CTAG 6 cut(s) 143, 272, 300, 347, 543, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.