RchiOBHm_Chr5g0020661

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016159
Physical Location & Seq
Reverse (-)
14924838 .. 14928103
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGGTGAGACATCATCATCATCAGAGAGAGGTCTCTTCATCATCCACAGCATGTATGGAGGATGAAATGAATCACATGAAGCCTGCATGGCTACAAGGTTTGATGGGGGAGACATTCTTTGGTGGTTGTGGGGTCCACGAGAACCGCAGGAAGAACGAGAAGAACGTCTTCTGTTTGCACTGTTGCCTCTCTATTTGCCCACACTGCCTTCATTCTCACCGTTCTCATCCTCTACTTCAGGTTAGAAGATATGTGTACCATGATGTGGTTAGATTGGGTGATCTTGAAAAGCTCATCGACTGTTCTTATATTCAGCCCTATTCCAATAACGGTGCCAAAGTGATATTCCTGAATCAGAGGCCACAGTCAAGGCCACTGGCGAGGACTAATTGTAACAAAGGCTTTGCTGCCAATATCTGTTTCACCTGTGACAGGATTCTCCAAGAGCCATTCCGCTTTTGTTCTCTCTCATGCAAGGTTGATCACTTGGTGCTCCAAGAGGAAGATTTATGCGGTATACTCTACCGTTTTGATGAATCCGACTTCACAATTTCTCAATTCGAAGGACTACGGATGGATGGCTCGGAGGTGATCGATGACGATGGCCAAATGATGTCTAGCTCTATCCTAGAGGACCCTGAAATGCAGTACAGAGGCTCATCATGCTCCAACAACAGCGATTCGGTAATGTCACGTGAACCGGAGGTCGTCGACAAGAAGAAGAAGAAGAAAGGGATCCTCCCAGGGATTATGCTCTCCCTCAGCAGCAGGAGAAAGGGTGCTCCTCAGAGGGCTCCTCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

268

Amino Acids

30.59

Weight (kDa)

7.55

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 82 - 160 9.1e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31040
fragaria_vesca FvH4_3g12690
malus_domestica MD05G1248500.v1.1 MD10G1229000.v1.1
prunus_persica Prupe.4G115600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020661
rosa_laevigata RLG00000032550
rosa_multiflora Rmu_sc0005607.1_g000024
rosa_roxburghii Rroxscaffold_1G00057620
rosa_rugosa Rorug05G0062300
rosa_samantha Rh5AG152000 Rh5BG151700 Rh5CG163000 Rh5DG150900
rosa_wichuraiana Rw5G013470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 2 cut(s) 517, 711
AciI CCGC 3 cut(s) 145, 454, 513
AclWI GGATC 2 cut(s) 730, 743
AcoI YGGCCR 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 221
AcvI CACGTG 1 cut(s) 695
AdeI CACNNNGTG 1 cut(s) 490
AfaI GTAC 2 cut(s) 257, 650
AfiI CCNNNNNNNGG 2 cut(s) 265, 432
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 4 cut(s) 329, 361, 404, 436
AluBI AGCT 2 cut(s) 292, 621
AluI AGCT 2 cut(s) 292, 621
Alw21I GWGCWC 2 cut(s) 495, 784
Alw26I GTCTC 2 cut(s) 37, 104
AlwI GGATC 2 cut(s) 730, 743
AoxI GGCC 3 cut(s) 359, 371, 604
ApeKI GCWGC 2 cut(s) 407, 765
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 133, 634
AsuHPI GGTGA 5 cut(s) 16, 209, 290, 415, 601
AsuII TTCGAA 1 cut(s) 561
AvaII GGWCC 2 cut(s) 133, 634
BalI TGGCCA 1 cut(s) 606
BamHI GGATCC 1 cut(s) 735
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 796
BauI CACGAG 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 495, 784
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 2 cut(s) 394, 777
BccI CCATC 4 cut(s) 97, 568, 572, 596
BciT130I CCWGG 1 cut(s) 744
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 37, 104
BfaI CTAG 2 cut(s) 618, 629
BglI GCCNNNNNGGC 1 cut(s) 88
BisI GCNGC 2 cut(s) 408, 766
BlsI GCNGC 2 cut(s) 409, 767
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 2 cut(s) 133, 634
BmgT120I GGNCC 2 cut(s) 133, 634
BmiI GGNNCC 5 cut(s) 134, 334, 636, 737, 795
BmrFI CCNGG 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 160
BplI GAGNNNNNCTC 1 cut(s) 781
Bpu10I CCTNAGC 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 695
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 742, 743
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 763, 793
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 432
Bse1I ACTGG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 744
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 742, 743
BseGI GGATG 5 cut(s) 41, 67, 226, 579, 583
BseLI CCNNNNNNNGG 2 cut(s) 265, 432
BseMII CTCAG 2 cut(s) 775, 800
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 774, 786
BseXI GCAGC 2 cut(s) 394, 777
BshFI GGCC 3 cut(s) 361, 373, 606
BshNI GGYRCC 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 495, 784
BsiSI CCGG 1 cut(s) 701
BslI CCNNNNNNNGG 2 cut(s) 265, 432
BsmAI GTCTC 2 cut(s) 37, 104
BsnI GGCC 3 cut(s) 361, 373, 606
Bso31I GGTCTC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 495, 784, 796
Bsp143I GATC 4 cut(s) 280, 481, 591, 735
BspACI CCGC 3 cut(s) 145, 454, 513
BspANI GGCC 3 cut(s) 361, 373, 606
BspCNI CTCAG 2 cut(s) 774, 799
BspDI ATCGAT 1 cut(s) 594
BspLI GGNNCC 5 cut(s) 134, 334, 636, 737, 795
BspPI GGATC 2 cut(s) 730, 743
BspT104I TTCGAA 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 742, 743
BssMI GATC 4 cut(s) 280, 481, 591, 735
BssNAI GTATAC 1 cut(s) 518
BssSI CACGAG 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 6 cut(s) 182, 221, 302, 332, 366, 527
Bst6I CTCTTC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 761, 786
BstENI CCTNNNNNAGG 1 cut(s) 430
BstF5I GGATG 5 cut(s) 41, 67, 226, 579, 583
BstKTI GATC 4 cut(s) 283, 484, 594, 738
BstMAI GTCTC 2 cut(s) 37, 104
BstMBI GATC 4 cut(s) 280, 481, 591, 735
BstMWI GCNNNNNNNGC 3 cut(s) 88, 204, 663
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 742
BstV1I GCAGC 2 cut(s) 394, 777
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
BstZ17I GTATAC 1 cut(s) 518
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 3 cut(s) 361, 373, 606
BsuTUI ATCGAT 1 cut(s) 594
BtsCI GGATG 5 cut(s) 41, 67, 226, 579, 583
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 3 cut(s) 178, 202, 374
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 133, 634
ClaI ATCGAT 1 cut(s) 594
Csp6I GTAC 2 cut(s) 256, 649
CviAII CATG 6 cut(s) 51, 76, 87, 260, 471, 663
CviQI GTAC 2 cut(s) 256, 649
DdeI CTNAG 2 cut(s) 761, 786
DpnI GATC 4 cut(s) 282, 483, 593, 737
DpnII GATC 4 cut(s) 280, 481, 591, 735
DraIII CACNNNGTG 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 133, 634
Eco57I CTGAAG 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 695
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 796
FaeI CATG 6 cut(s) 54, 79, 90, 263, 474, 666
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 6 cut(s) 50, 75, 86, 259, 470, 662
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 2 cut(s) 517, 711
Fnu4HI GCNGC 2 cut(s) 408, 766
FokI GGATG 5 cut(s) 28, 74, 213, 586, 590
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 2 cut(s) 408, 766
FspBI CTAG 2 cut(s) 618, 629
GluI GCNGC 2 cut(s) 408, 766
HaeIII GGCC 3 cut(s) 361, 373, 606
HapII CCGG 1 cut(s) 701
Hin1II CATG 6 cut(s) 54, 79, 90, 263, 474, 666
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 5 cut(s) 70, 352, 436, 536, 680
HpaII CCGG 1 cut(s) 701
HphI GGTGA 5 cut(s) 16, 209, 290, 415, 601
Hpy166II GTNNAC 5 cut(s) 136, 256, 518, 698, 712
Hpy188I TCNGA 5 cut(s) 24, 357, 541, 586, 789
Hpy188III TCNNGA 2 cut(s) 284, 349
Hpy8I GTNNAC 5 cut(s) 136, 256, 518, 698, 712
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 2 cut(s) 218, 557
HpyCH4III ACNGT 6 cut(s) 182, 221, 302, 332, 366, 527
HpyCH4IV ACGT 2 cut(s) 165, 694
HpyCH4V TGCA 4 cut(s) 86, 178, 474, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 204, 663
HpyF3I CTNAG 2 cut(s) 761, 786
HpySE526I ACGT 2 cut(s) 165, 694
Hsp92II CATG 6 cut(s) 54, 79, 90, 263, 474, 666
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 280, 481, 591, 735
LmnI GCTCC 4 cut(s) 498, 671, 787, 799
Lsp1109I GCAGC 2 cut(s) 394, 777
MaeI CTAG 2 cut(s) 618, 629
MaeII ACGT 2 cut(s) 165, 694
MaeIII GTNAC 3 cut(s) 392, 428, 690
MalI GATC 4 cut(s) 282, 483, 593, 737
MboI GATC 4 cut(s) 280, 481, 591, 735
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 3 cut(s) 495, 784, 796
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 3 cut(s) 388, 549, 557
MluNI TGGCCA 1 cut(s) 606
MmeI TCCRAC 2 cut(s) 564, 693
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 606
MseI TTAA 1 cut(s) 805
Msp20I TGGCCA 1 cut(s) 606
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
MwoI GCNNNNNNNGC 3 cut(s) 88, 204, 663
NdeII GATC 4 cut(s) 280, 481, 591, 735
NlaIII CATG 6 cut(s) 54, 79, 90, 263, 474, 666
NlaIV GGNNCC 5 cut(s) 134, 334, 636, 737, 795
NmuCI GTSAC 2 cut(s) 428, 690
NspI RCATGY 1 cut(s) 54
NspV TTCGAA 1 cut(s) 561
PasI CCCWGGG 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 5 cut(s) 70, 352, 436, 536, 680
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 2 cut(s) 409, 767
PmaCI CACGTG 1 cut(s) 695
PmlI CACGTG 1 cut(s) 695
Ppu21I YACGTR 1 cut(s) 695
PpuMI RGGWCCY 1 cut(s) 634
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 742
PspCI CACGTG 1 cut(s) 695
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 5 cut(s) 134, 334, 636, 737, 795
PspPI GGNCC 2 cut(s) 133, 634
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 1 cut(s) 735
RsaI GTAC 2 cut(s) 257, 650
RsaNI GTAC 2 cut(s) 256, 649
SalI GTCGAC 1 cut(s) 710
SaqAI TTAA 1 cut(s) 805
SatI GCNGC 2 cut(s) 408, 766
Sau3AI GATC 4 cut(s) 280, 481, 591, 735
Sau96I GGNCC 2 cut(s) 133, 634
ScrFI CCNGG 1 cut(s) 744
SduI GDGCHC 3 cut(s) 495, 784, 796
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 2 cut(s) 133, 634
Sse9I AATT 3 cut(s) 388, 549, 557
SsiI CCGC 3 cut(s) 145, 454, 513
SspMI CTAG 2 cut(s) 618, 629
StyD4I CCNGG 1 cut(s) 742
TaaI ACNGT 6 cut(s) 182, 221, 302, 332, 366, 527
TaiI ACGT 2 cut(s) 168, 697
TaqI TCGA 4 cut(s) 297, 561, 594, 711
TasI AATT 3 cut(s) 388, 549, 557
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 5 cut(s) 70, 352, 436, 536, 680
Tru1I TTAA 1 cut(s) 805
Tru9I TTAA 1 cut(s) 805
TscAI CASTG 3 cut(s) 185, 209, 381
TseFI GTSAC 2 cut(s) 428, 690
TseI GCWGC 2 cut(s) 407, 765
Tsp45I GTSAC 2 cut(s) 428, 690
TspDTI ATGAA 6 cut(s) 27, 78, 83, 92, 200, 549
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 3 cut(s) 185, 209, 381
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 133, 634
XagI CCTNNNNNAGG 1 cut(s) 430
XceI RCATGY 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 2 cut(s) 517, 711
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 2 cut(s) 618, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.