RchiOBHm_Chr5g0028931

Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
22726162 .. 22726347
186 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGTTGCAGGGTGATGGGCAGAACTCCATTATCATTGTGGGTGGTGCCAACATGAAGTGTTGGCCGGAGAGCCTGAGTGATGAGGATTTGAGGGTTGTCAAGAGTGCTGGGATTGTTTTGCTTCAGAGGGAGATTCCAGAAGTGGTCAACATTCAGGTTGGAAAGGTCGATCAGGTAATTGAATGA

Protein Analysis

61

Amino Acids

6.63

Weight (kDa)

4.51

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019813)

Species Orthologous Gene IDs
pyrus_communis pycom03g19930
rosa_chinensis RchiOBHm_Chr5g0028931
rosa_laevigata RLG00000033128
rosa_multiflora Rmu_sc0040883.1_g000001 Rmu_sc0040884.1_g000001
rosa_samantha Rh5CG222900 Rh5DG205900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 182
AoxI GGCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 23
BanI GGYRCC 1 cut(s) 44
BccI CCATC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 46
BseMII CTCAG 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 44
BssMI GATC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 74
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 64
CviAII CATG 1 cut(s) 52
CviJI RGCY 2 cut(s) 64, 72
CviKI_1 RGCY 2 cut(s) 64, 72
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 107
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 100, 137
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 78, 86, 93, 140, 150, 158
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 76, 84, 120
MspI CCGG 1 cut(s) 65
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 169
SetI ASST 3 cut(s) 159, 168, 177
SgeI CNNG 8 cut(s) 20, 64, 77, 85, 112, 120, 149, 167
Sse9I AATT 1 cut(s) 177
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.