Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040883.1

Orthogroup ID

OG0019813

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 335

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040883.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 335 bp

gcaagctggcttacccaacctactttgtgggccaggtgggtcaggatgcccatggcaaactggtcactgaggccctcaggggtggtggggtccacctggatcacctgactagtgtggctgctgcacccactggtcatgctgtggtgatgttgcagagtgatgggcagaactccattatcattgtgggtggtgccaacatgaggtgttggcctgagagtctgagtgatgaggatttgagggttgtgaggagtgctgggattgttttgcttcagagggagattccagaagtggtcaacattcaggttgcaaaggtcagggcttgtgtgattgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0019200 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00030 map00030

Pfam Domains

Protein Families

PfkB

Protein Analysis

110

Amino Acids

11.71

Weight (kDa)

6.07

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019813)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g19930
rosa_chinensis	RchiOBHm_Chr5g0028931
rosa_laevigata	RLG00000033128
rosa_multiflora	Rmu_sc0040883.1_g000001 Rmu_sc0040884.1_g000001
rosa_samantha	Rh5CG222900 Rh5DG205900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	331
AhlI	ACTAGT	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	32, 95
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	3 cut(s)	30, 71, 208
ApeKI	GCWGC	2 cut(s)	118, 121
AspS9I	GGNCC	3 cut(s)	30, 72, 90
AsuHPI	GGTGA	2 cut(s)	94, 156
AvaII	GGWCC	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	105, 108
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	34, 97
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	119, 122
BlsI	GCNGC	2 cut(s)	120, 123
Bme1390I	CCNGG	2 cut(s)	34, 97
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	30, 72, 90
BmiI	GGNNCC	2 cut(s)	91, 192
BmrFI	CCNGG	2 cut(s)	34, 97
BmsI	GCATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	65, 135
Bse21I	CCTNAGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	34, 97
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	4 cut(s)	59, 90, 203, 211
BseNI	ACTGG	2 cut(s)	65, 135
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	105, 108
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	32, 73, 210
BshNI	GGYRCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	3 cut(s)	32, 73, 210
Bsp143I	GATC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	3 cut(s)	32, 73, 210
BspCNI	CTCAG	4 cut(s)	60, 89, 204, 212
BspLI	GGNNCC	2 cut(s)	91, 192
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	65, 135
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	34, 97
BstC8I	GCNNGC	2 cut(s)	4, 8
BstDEI	CTNAG	4 cut(s)	68, 76, 212, 220
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	34, 97
BstSCI	CCNGG	2 cut(s)	32, 95
BstV1I	GCAGC	2 cut(s)	105, 108
Bsu36I	CCTNAGG	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	32, 73, 210
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	65, 128
Cac8I	GCNNGC	2 cut(s)	4, 8
Cfr13I	GGNCC	3 cut(s)	30, 72, 90
CviAII	CATG	3 cut(s)	52, 136, 198
CviJI	RGCY	7 cut(s)	6, 10, 32, 73, 118, 210, 319
CviKI_1	RGCY	7 cut(s)	6, 10, 32, 73, 118, 210, 319
DdeI	CTNAG	4 cut(s)	68, 76, 212, 220
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	32, 95
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	55, 139, 201
FaiI	YATR	3 cut(s)	53, 137, 199
FatI	CATG	3 cut(s)	51, 135, 197
Fnu4HI	GCNGC	2 cut(s)	119, 122
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	119, 122
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	119, 122
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	32, 73, 210
Hin1II	CATG	3 cut(s)	55, 139, 201
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	216, 279
HphI	GGTGA	2 cut(s)	94, 156
Hpy166II	GTNNAC	2 cut(s)	93, 294
Hpy188I	TCNGA	2 cut(s)	221, 272
Hpy188III	TCNNGA	2 cut(s)	43, 283
Hpy8I	GTNNAC	2 cut(s)	93, 294
HpyCH4V	TGCA	3 cut(s)	124, 153, 307
HpyF3I	CTNAG	4 cut(s)	68, 76, 212, 220
Hsp92II	CATG	3 cut(s)	55, 139, 201
Kzo9I	GATC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	105, 108
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	63, 85, 194, 222, 230, 239, 266
MspR9I	CCNGG	2 cut(s)	34, 97
MvaI	CCWGG	2 cut(s)	34, 97
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	3 cut(s)	55, 139, 201
NlaIV	GGNNCC	2 cut(s)	91, 192
NmuCI	GTSAC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	120, 123
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	32, 95
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	32, 95
PspN4I	GGNNCC	2 cut(s)	91, 192
PspPI	GGNCC	3 cut(s)	30, 72, 90
SatI	GCNGC	2 cut(s)	119, 122
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	3 cut(s)	30, 72, 90
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	34, 97
SetI	ASST	8 cut(s)	8, 22, 38, 98, 107, 205, 305, 314
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	90
SpeI	ACTAGT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	32, 95
StyI	CCWWGG	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	279
TscAI	CASTG	2 cut(s)	72, 135
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	2 cut(s)	118, 121
Tsp45I	GTSAC	1 cut(s)	63
TspRI	CASTG	2 cut(s)	72, 135
VpaK11BI	GGWCC	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.