RchiOBHm_Chr5g0030711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017744
Physical Location & Seq
Reverse (-)
24352478 .. 24353561
1084 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGTCCGGGGAATCTTCTTCACCGGCTTCGTCCTCAAATTTTGAAACTGAGCAATCTTATTCAGACAGCTGTATTTCTCCGAGTCCAAGTATTCAAATAGTTTCAAAATCGGTGTCTGACAGGCTGCTGGGCAAGTTCTTTGATGCCTCGCAATACGACTTTGATTATGAGCAAAGTGGTTTGTGGTCTCCTCCACTACGCCGGAGTGTGTTTCTCGACTCACCGGGGAATATAATCTCGTGTTTTGATCATCAAGATGATGATGAAAAAAGATTCTACTCCAAGCTTAAGAGTGCCAAGATGGCATGGCCTAGACGCTTCTTTTGTTTGATCGCTGCCTTGTGGTGCTCTTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

5.01

Isoelectric Point (pI)

102.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017744)

Species Orthologous Gene IDs
malus_domestica MD11G1264800.v1.1
prunus_persica Prupe.4G161500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030711
rosa_laevigata RLG00000033246
rosa_multiflora Rmu_sc0003238.1_g000033
rosa_roxburghii Rroxscaffold_1G00049600
rosa_rugosa Rorug05G0120300
rosa_samantha Rh5BG210900 Rh5CG234600 Rh5DG216200
rosa_wichuraiana Rw0G000920 Rw5G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 44, 95, 105
AluBI AGCT 2 cut(s) 69, 286
AluI AGCT 2 cut(s) 69, 286
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 124, 335
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 306, 338
AsuC2I CCSGG 2 cut(s) 7, 225
AsuHPI GGTGA 2 cut(s) 12, 213
BauI CACGAG 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 111, 322
BccI CCATC 1 cut(s) 295
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 7, 225
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 2 cut(s) 125, 336
BlsI GCNGC 2 cut(s) 126, 337
Bme1390I CCNGG 2 cut(s) 7, 225
BmrFI CCNGG 2 cut(s) 7, 225
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 7, 225
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 6, 224
Bse118I RCCGGY 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 6, 224
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 111, 322
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 4 cut(s) 6, 23, 202, 224
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 247, 330
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 6, 224
BssMI GATC 2 cut(s) 247, 330
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 355
BstAFI CTTAAG 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 250, 333
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 247, 330
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 5, 223
BstV1I GCAGC 2 cut(s) 111, 322
BsuRI GGCC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 22
CseI GACGC 1 cut(s) 324
CviAII CATG 1 cut(s) 306
CviJI RGCY 5 cut(s) 26, 69, 124, 286, 310
CviKI_1 RGCY 5 cut(s) 26, 69, 124, 286, 310
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 249, 332
DpnII GATC 2 cut(s) 247, 330
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 336
FaeI CATG 1 cut(s) 309
FaiI YATR 3 cut(s) 168, 233, 307
FatI CATG 1 cut(s) 305
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 125, 336
Fsp4HI GCNGC 2 cut(s) 125, 336
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 125, 336
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 310
HapII CCGG 4 cut(s) 6, 23, 202, 224
HgaI GACGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 11, 82, 218, 273
HpaII CCGG 4 cut(s) 6, 23, 202, 224
HphI GGTGA 2 cut(s) 12, 213
Hpy188I TCNGA 3 cut(s) 64, 81, 118
Hpy188III TCNNGA 2 cut(s) 215, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 330
LguI GCTCTTC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 19, 36, 106, 113, 215, 237, 339
Lsp1109I GCAGC 2 cut(s) 111, 322
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 312
MalI GATC 2 cut(s) 249, 332
MboI GATC 2 cut(s) 247, 330
MboII GAAGA 3 cut(s) 6, 9, 342
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 1 cut(s) 37
MlyI GAGTC 2 cut(s) 91, 212
MnlI CCTC 3 cut(s) 43, 157, 201
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 4 cut(s) 6, 23, 202, 224
MspR9I CCNGG 2 cut(s) 7, 225
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 2 cut(s) 7, 225
NdeII GATC 2 cut(s) 247, 330
NlaIII CATG 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 11, 273
PkrI GCNGC 2 cut(s) 126, 337
PleI GAGTC 2 cut(s) 90, 212
PpsI GAGTC 2 cut(s) 90, 212
PspFI CCCAGC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 125, 336
Sau3AI GATC 2 cut(s) 247, 330
SchI GAGTC 2 cut(s) 91, 212
ScrFI CCNGG 2 cut(s) 7, 225
SduI GDGCHC 1 cut(s) 350
SetI ASST 2 cut(s) 71, 288
SfaNI GCATC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 5, 223
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 37
TfiI GAWTC 2 cut(s) 11, 273
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 2 cut(s) 124, 335
TspDTI ATGAA 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 287
XapI RAATTY 1 cut(s) 37
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.