RchiOBHm_Chr5g0033091

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019418
Physical Location & Seq
Reverse (-)
26892177 .. 26893898
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGGGGGACGGACTCCGAGGAGTAGGCTTGGCGGGCGACGCGGTGGATGTCAGAGGTGATAATACCTTATGCAAGGCTTTTTTGTCGATCTTCAAGTTCTCAAAGATGAATTGTGCTCACTTGGAGAACTGTTTGCATGAAGCAAGAGAGGAAGCTCAAACCCATCTTTTTGCTGCTGATCGTAGGGCCTCAGAGTACAGTGCACTGCGAGCATCTGCTGTGAAAATGCGTGGCCTTTTTGAAAGGCTTCGGAGCTGTGTTAATGCCCAGGGAATGACTGGTTTTGTTGAGTCTTTGCGCAGTTTAGCACAATCTCTGGGAAAGTTTGTGCCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

8.45

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 299
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 32, 41
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 2 cut(s) 94, 242
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 155, 255
AluI AGCT 2 cut(s) 155, 255
Alw21I GWGCWC 2 cut(s) 118, 205
Alw44I GTGCAC 1 cut(s) 201
AoxI GGCC 2 cut(s) 186, 232
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 118, 205
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 269
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 16, 267, 268
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 16, 267, 268
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 188, 234
BsiHKAI GWGCWC 2 cut(s) 118, 205
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 188, 234
Bsp1286I GDGCHC 2 cut(s) 118, 205
Bsp143I GATC 2 cut(s) 87, 178
BspACI CCGC 2 cut(s) 32, 41
BspANI GGCC 2 cut(s) 188, 234
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 16, 267, 268
BssMI GATC 2 cut(s) 87, 178
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 131, 200
BstC8I GCNNGC 2 cut(s) 34, 210
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 2 cut(s) 90, 181
BstMBI GATC 2 cut(s) 87, 178
BstMWI GCNNNNNNNGC 3 cut(s) 33, 38, 209
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 188, 234
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 203, 205
Cac8I GCNNGC 2 cut(s) 34, 210
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 137
CviJI RGCY 7 cut(s) 27, 77, 155, 188, 234, 247, 255
CviKI_1 RGCY 7 cut(s) 27, 77, 155, 188, 234, 247, 255
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 89, 180
DpnII GATC 2 cut(s) 87, 178
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 70, 138
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 174
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 2 cut(s) 188, 234
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 300
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 12, 290
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 4 cut(s) 17, 53, 193, 252
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 131, 200
HpyCH4V TGCA 3 cut(s) 72, 136, 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 38, 209
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 87, 178
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 254, 264, 281, 302
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 221
MalI GATC 2 cut(s) 89, 180
MboI GATC 2 cut(s) 87, 178
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 118, 205
MluCI AATT 1 cut(s) 109
MlyI GAGTC 2 cut(s) 6, 299
MnlI CCTC 4 cut(s) 11, 47, 142, 199
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 33, 38, 209
NdeII GATC 2 cut(s) 87, 178
NlaIII CATG 1 cut(s) 140
NsbI TGCGCA 1 cut(s) 299
PasI CCCWGGG 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 2 cut(s) 6, 298
PpsI GAGTC 2 cut(s) 6, 298
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 87, 178
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 2 cut(s) 6, 299
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 118, 205
SetI ASST 4 cut(s) 58, 68, 157, 257
SfaNI GCATC 1 cut(s) 221
Sse9I AATT 1 cut(s) 109
SsiI CCGC 2 cut(s) 32, 41
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 131, 200
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 205, 210
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 122, 153
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 205, 210
VneI GTGCAC 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.