RorugPtG0003600

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000008
OG0019418
Physical Location & Seq
Reverse (-)
80231 .. 81914
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
RorugPtG0003600.1

Sequence Viewer

Length: 417 bp
ATGGCAAAACCTATACCAAAAATTGGTTCACGTAGAAATAGACGTATTGGTTCACGTAAGAATGCGCGTAGAATACCAAAGGGAGTTATCCATGTTCAAGCAAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGGGGTCGAGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCGGGAAATGCTATTCGTACAGTGGTGGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGCCCGGGTCTCGGGAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCCAAAAAAAGACGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

12.0

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 28 - 137 1.4e-51 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 23, 383
AccBSI CCGCTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 165, 213, 222, 227, 311
AclWI GGATC 1 cut(s) 261
AfaI GTAC 4 cut(s) 138, 172, 190, 244
AfiI CCNNNNNNNGG 3 cut(s) 23, 299, 383
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 98, 109, 184
AjiI CACGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 2 cut(s) 292, 299
AoxI GGCC 2 cut(s) 289, 392
ApeKI GCWGC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 159, 290, 393
AsuC2I CCSGG 2 cut(s) 293, 294
AvaI CYCGRG 2 cut(s) 292, 299
AvaII GGWCC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 236
BcnI CCSGG 2 cut(s) 293, 294
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 3 cut(s) 213, 225, 312
BlsI GCNGC 3 cut(s) 214, 226, 313
Bme1390I CCNGG 2 cut(s) 293, 294
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 2 cut(s) 292, 299
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 159, 290, 393
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 293, 294
BmsI GCATC 1 cut(s) 298
BpuMI CCSGG 2 cut(s) 293, 294
BsaAI YACGTR 2 cut(s) 32, 56
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 299, 383
Bse118I RCCGGY 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 3 cut(s) 23, 299, 383
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 291, 394
BsiHKCI CYCGRG 2 cut(s) 292, 299
BsiSI CCGG 2 cut(s) 168, 293
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 23, 299, 383
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 291, 394
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 2 cut(s) 292, 299
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 5 cut(s) 165, 213, 222, 227, 311
BspANI GGCC 2 cut(s) 291, 394
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 1 cut(s) 253
BssNAI GTATAC 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 127, 247
Bst6I CTCTTC 1 cut(s) 190
BstBAI YACGTR 2 cut(s) 32, 56
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 221, 233, 320
BstSCI CCNGG 2 cut(s) 291, 292
BstSFI CTRYAG 1 cut(s) 388
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 291, 394
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 252
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 159, 290, 393
Cfr9I CCCGGG 1 cut(s) 292
Csp6I GTAC 4 cut(s) 137, 171, 189, 243
CviAII CATG 2 cut(s) 92, 280
CviJI RGCY 4 cut(s) 291, 323, 387, 394
CviKI_1 RGCY 4 cut(s) 291, 323, 387, 394
CviQI GTAC 4 cut(s) 137, 171, 189, 243
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 159
Eco88I CYCGRG 2 cut(s) 292, 299
EcoO109I RGGNCCY 1 cut(s) 393
FaeI CATG 2 cut(s) 95, 283
FaiI YATR 8 cut(s) 14, 93, 263, 281, 341, 356, 374, 381
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 91, 279
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 213, 225, 312
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 213, 225, 312
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 213, 225, 312
HaeIII GGCC 2 cut(s) 291, 394
HapII CCGG 2 cut(s) 168, 293
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 95, 283
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 180
HpaII CCGG 2 cut(s) 168, 293
Hpy166II GTNNAC 3 cut(s) 29, 53, 341
Hpy188III TCNNGA 2 cut(s) 280, 301
Hpy8I GTNNAC 3 cut(s) 29, 53, 341
HpyCH4III ACNGT 2 cut(s) 127, 247
HpyCH4IV ACGT 4 cut(s) 31, 43, 55, 409
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 233, 320
HpySE526I ACGT 4 cut(s) 31, 43, 55, 409
Hsp92II CATG 2 cut(s) 95, 283
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 2 cut(s) 181, 306
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 298
MaeII ACGT 4 cut(s) 31, 43, 55, 409
MaeIII GTNAC 3 cut(s) 121, 127, 364
MalI GATC 1 cut(s) 255
MbiI CCGCTC 1 cut(s) 215
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 207
MluCI AATT 2 cut(s) 21, 150
MnlI CCTC 2 cut(s) 172, 191
MseI TTAA 2 cut(s) 317, 347
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 2 cut(s) 168, 293
MspR9I CCNGG 2 cut(s) 293, 294
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 221, 233, 320
NciI CCSGG 2 cut(s) 293, 294
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 95, 283
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 121
PagI TCATGA 1 cut(s) 279
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 180
PflMI CCANNNNNTGG 2 cut(s) 23, 383
PkrI GCNGC 3 cut(s) 214, 226, 313
Ppu21I YACGTR 2 cut(s) 32, 56
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 3 cut(s) 159, 290, 393
RsaI GTAC 4 cut(s) 138, 172, 190, 244
RsaNI GTAC 4 cut(s) 137, 171, 189, 243
SaqAI TTAA 2 cut(s) 317, 347
SatI GCNGC 3 cut(s) 213, 225, 312
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 3 cut(s) 159, 290, 393
ScrFI CCNGG 2 cut(s) 293, 294
SetI ASST 7 cut(s) 13, 34, 46, 58, 262, 325, 412
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 159
SmaI CCCGGG 1 cut(s) 294
Sse9I AATT 2 cut(s) 21, 150
SsiI CCGC 5 cut(s) 165, 213, 222, 227, 311
StyD4I CCNGG 2 cut(s) 291, 292
TaaI ACNGT 2 cut(s) 127, 247
TaiI ACGT 4 cut(s) 34, 46, 58, 412
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 21, 150
TauI GCSGC 2 cut(s) 215, 314
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 317, 347
Tru9I TTAA 2 cut(s) 317, 347
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 343
TspMI CCCGGG 1 cut(s) 292
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 2 cut(s) 23, 383
VpaK11BI GGWCC 1 cut(s) 159
XmaI CCCGGG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.