Rh2AG071500

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019418
Physical Location & Seq
Reverse (-)
5984641 .. 5985851
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG071500.1

Sequence Viewer

Length: 327 bp
ATGGGGGACGGACTCCAAGGAGTAGGCGCGGCGGGCGACACGGTGGATGTCAGAGGCCTGTTAATTACATCTAATGAGGTGTTGCTGCATGAAAAACGTTCACATATGTTAGGCAAATGCGACAAGCTTGGGAATTGGACACAAATAGGAAGCTCCTTGATGAATCTCAGGGCCTCAGAGTACAGTGCACTGCGAGCATCTGCTGTGAAAATGCGTGGCCTTTTTGAAAGGCTTCGGAGCTATGTTAATGCCCAGGGAATGACTGGTTTTGTTGAGTCTTTGCACAGTTTAGCACAATCTCTGGGAAAGTTTGTGGTCCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

108

Amino Acids

11.7

Weight (kDa)

9.36

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 29, 32
AclI AACGTT 1 cut(s) 97
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 127, 153, 240
AluI AGCT 3 cut(s) 127, 153, 240
Alw21I GWGCWC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 186
AoxI GGCC 3 cut(s) 55, 171, 217
ApaLI GTGCAC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 171, 316
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 254
BisI GCNGC 2 cut(s) 30, 86
BlsI GCNGC 2 cut(s) 31, 87
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 171, 316
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 16, 252, 253
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 3 cut(s) 16, 252, 253
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 181, 189
BseNI ACTGG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 57, 173, 219
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 3 cut(s) 57, 173, 219
Bsp1286I GDGCHC 1 cut(s) 190
BspACI CCGC 2 cut(s) 29, 32
BspANI GGCC 3 cut(s) 57, 173, 219
BspCNI CTCAG 2 cut(s) 180, 188
BspFNI CGCG 1 cut(s) 29
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 16, 252, 253
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 43, 185, 287
BstC8I GCNNGC 2 cut(s) 34, 195
BstDEI CTNAG 2 cut(s) 167, 175
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 33, 194
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 190
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 57, 173, 219
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 2 cut(s) 188, 190
Cac8I GCNNGC 2 cut(s) 34, 195
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 171, 316
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 89
CviJI RGCY 7 cut(s) 57, 127, 153, 173, 219, 232, 240
CviKI_1 RGCY 7 cut(s) 57, 127, 153, 173, 219, 232, 240
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 167, 175
Eco130I CCWWGG 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 90, 105, 107, 243
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 30, 86
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 30, 86
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 30, 86
HaeIII GGCC 3 cut(s) 57, 173, 219
HhaI GCGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 12, 163, 275
Hpy166II GTNNAC 2 cut(s) 101, 188
Hpy188I TCNGA 3 cut(s) 53, 178, 237
Hpy8I GTNNAC 2 cut(s) 101, 188
HpyCH4III ACNGT 3 cut(s) 43, 185, 287
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 88, 188, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 194
HpyF3I CTNAG 2 cut(s) 167, 175
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 158, 237
LpnPI CCDG 6 cut(s) 71, 154, 239, 249, 266, 287
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 63, 133
MlyI GAGTC 2 cut(s) 6, 284
MnlI CCTC 3 cut(s) 47, 70, 184
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 62, 246
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 33, 194
NdeI CATATG 1 cut(s) 105
NlaIII CATG 1 cut(s) 92
PasI CCCWGGG 1 cut(s) 253
PceI AGGCCT 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 31, 87
PleI GAGTC 2 cut(s) 6, 283
PpsI GAGTC 2 cut(s) 6, 283
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspPI GGNCC 2 cut(s) 171, 316
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 62, 246
SatI GCNGC 2 cut(s) 30, 86
Sau96I GGNCC 2 cut(s) 171, 316
SchI GAGTC 2 cut(s) 6, 284
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 190
SetI ASST 5 cut(s) 81, 100, 129, 155, 242
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 316
Sse9I AATT 2 cut(s) 63, 133
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 2 cut(s) 29, 32
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 43, 185, 287
TaiI ACGT 1 cut(s) 100
TasI AATT 2 cut(s) 63, 133
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 62, 246
Tru9I TTAA 2 cut(s) 62, 246
TscAI CASTG 2 cut(s) 190, 195
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 105, 176
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 190, 195
VneI GTGCAC 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.