Rh2CG536000

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019418
Physical Location & Seq
Reverse (-)
71280398 .. 71283565
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG536000.1

Sequence Viewer

Length: 168 bp
ATGAATCTCAGGGCCTCAGAGTACAGTGCACTGCGAGCATCTGCTGTGAAAATGCGTGGCCTTTTTGAAAGGCTTCGGAGCTATGTTAATGCCCAGGGAATGACTGGTTTTGTTGAGTCTTTGCACAGTTTAGCACAATCTCTGGGAAAGTTTGTGGTCCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

55

Amino Acids

6.14

Weight (kDa)

10.41

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 27
AoxI GGCC 2 cut(s) 12, 58
ApaLI GTGCAC 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 12, 157
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 12, 157
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 93, 94
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 93, 94
BseMII CTCAG 2 cut(s) 22, 30
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 31
BshFI GGCC 2 cut(s) 14, 60
BsiHKAI GWGCWC 1 cut(s) 31
BsnI GGCC 2 cut(s) 14, 60
Bsp1286I GDGCHC 1 cut(s) 31
BspANI GGCC 2 cut(s) 14, 60
BspCNI CTCAG 2 cut(s) 21, 29
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 93, 94
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 26, 128
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 8, 16
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 14, 60
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 31
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 12, 157
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 4 cut(s) 14, 60, 73, 81
CviKI_1 RGCY 4 cut(s) 14, 60, 73, 81
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 2 cut(s) 8, 16
Eco47I GGWCC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 93
FaiI YATR 1 cut(s) 84
HaeIII GGCC 2 cut(s) 14, 60
HinfI GANTC 2 cut(s) 4, 116
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 19, 78
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 26, 128
HpyCH4V TGCA 2 cut(s) 29, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 8, 16
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 80, 90, 107, 128
LweI GCATC 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 35
PasI CCCWGGG 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 2 cut(s) 12, 157
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 12, 157
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 31
SetI ASST 1 cut(s) 83
SfaNI GCATC 1 cut(s) 47
SgeI CNNG 7 cut(s) 22, 47, 68, 106, 107, 117, 155
SinI GGWCC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 26, 128
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 31, 36
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 31, 36
VneI GTGCAC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.